0abed78024d40b506c2b2e3a49ad483045bc5e1d
mspeir
  Sat Aug 1 20:53:25 2026 -0700
singleCellSignalsPeaks: add native mm10 track

mm10 counterpart of the hg38 track: 629 single-cell ATAC signal (bigWig) and
peak (bigNarrowPeak) subtracks from 9 Cell Browser datasets, re-parented under
one faceted composite in the regulation group. Colored by broad cell class from
the same palette as hg38, grouped by class, off by default; cell types are
paper-curated and the facets/longLabels are harmonized (see the makeDoc).

Data lives in /hive/data/genomes/mm10/bed/singleCellSignalsPeaks and is served
via the /gbdb/mm10/bbi symlink; the .ra is regenerated by
makeSingleCellSignalsPeaksRa.py from the Cell Browser hub build. Included in
mm10 trackDb.ra (alpha).

refs #37914

Co-Authored-By: Claude Opus 4.8 (1M context) <noreply@anthropic.com>

diff --git src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
index 7b09a05e53c..9177e1b5281 100644
--- src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
+++ src/hg/makeDb/trackDb/mouse/mm10/trackDb.ra
@@ -348,30 +348,31 @@
 group varRep
 
 track spMut override
 group pub
 bigDataUrl /gbdb/$D/uniprot/unipMut.bb
 
 #######################3
 # regulation tracks
 
 include trackDb.encode3.ra beta,public
 include trackDb.encode3.alpha.ra alpha
 include encode3RenEnhancerGene.ra
 include encode.cCREs.override.ra
 include encode4Reg.ra
 include fantom5.ra
+include singleCellSignalsPeaks.ra alpha
 
 track epdNew
 compositeTrack on
 shortLabel EPDnew Promoters
 longLabel Promoters from EPDnew
 html ../../epdNewPromoter
 type bigBed 8
 group regulation
 visibility hide
 urlLabel EPDnew link:
 bedNameLabel Promoter ID
 exonArrows on
 
     track epdNewPromoter
     shortLabel EPDnew v6