Gene annotation Test Results

hg16

Annotation Data Set Larger than 2 Megs Exons larger than 10k Largest exonCount Overlapping annotations
Known Genes 4 2 191 20k
Refseq 4k
Ensembl 1 (ENST00000336517) 315
Twinscan 0 6 274 0
ECgene 0 338 (18 larger than 15k; 5 larger than 50k) 0
FGene 14 4 (2 larger than 15k) 252 0
Acembly 0 308 (68 larger than 100k) 313

hg15

Annotation Data Set Larger than 2 Megs Exons larger than 10k Largest exonCount Overlapping annotations
Acembly 168 (42 larger than 100k)

mm4

Annotation Data Set Larger than 2 Megs Exons larger than 10k Largest exonCount Overlapping annotations
Twinscan 0 3 319 0
SGP 0 4 127 0

rn3

Annotation Data Set Larger than 2 Megs Exons larger than 10k Largest exonCount Overlapping annotations
ECgene 0 5 (all less than 12k) 164 0

mm3

Annotation Data Set Larger than 2 Megs Exons larger than 10k Largest exonCount Overlapping annotations
ECgene 3 (M4C3823.21, M6C2749.1, MXC2729.3) 23 (all less than 14k) 117 0

galGal1

Annotation Data Set Larger than 2 Megs Exons larger than 10k Largest exonCount Overlapping annotations
Genscan 0 1 (11561 bases; 20 are larger than 5k) 253 0

galGal2

Annotation Data Set Larger than 2 Megs Exons larger than 10k Largest exonCount Overlapping annotations
Genscan 0 1 (11561 bases; 19 are larger than 5k) 253 0
Geneid 0 1 (11469 bases) 229 0