Checking file: http://genome.ucsc.edu/goldenPath/pubs.html ---------------------------------- Link = Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project URL = http://www.nature.com/nature/journal/v447/n7146/full/nature05874.html Response Code = 0 ---------------------------------- ---------------------------------- Link = A second generation human haplotype map of over 3.1 million SNPs URL = http://www.nature.com/nature/journal/v449/n7164/full/nature06258.html Response Code = 0 ---------------------------------- ---------------------------------- Link = 28-Way vertebrate alignment and conservation track in the UCSC Genome Browser URL = http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=retrieve&db=pubmed&list_uids=17984227&dopt=AbstractPlus Response Code = 0 ---------------------------------- ---------------------------------- Link = Discovery of functional elements in 12 Drosophila genomes using evolutionary signatures URL = http://www.nature.com/nature/journal/v450/n7167/full/nature06340.html Response Code = 0 ---------------------------------- ---------------------------------- Link = Conserved noncoding sequences are selectively constrained and not mutation cold spots URL = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=pubmed&cmd=Retrieve&dopt=AbstractPlus&list_uids=16380714&itool=iconabstr&query_hl=20&itool=pubmed_docsum Response Code = 0 ---------------------------------- ---------------------------------- Link = Computational screening of conserved genomic DNA in search of functional noncoding elements URL = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16170870&query_hl=4&itool=pubmed_docsum Response Code = 0 ---------------------------------- ---------------------------------- Link = Initial sequence of the chimpanzee genome and comparison with the human genome URL = http://www.nature.com/nature/journal/v437/n7055/full/nature04072.html Response Code = 0 ---------------------------------- ---------------------------------- Link = Counterexample to a Claim About the Reconstruction of Ancestral Character States URL = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=16126665&query_hl=1 Response Code = 0 ---------------------------------- ---------------------------------- Link = Ultraconserved elements in the human genome URL = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15131266&query_hl=1 Response Code = 0 ---------------------------------- ---------------------------------- Link = Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution URL = http://www.nature.com/nature/journal/v432/n7018/full/nature03154.html Response Code = 0 ---------------------------------- ---------------------------------- Link = Finishing the euchromatic sequence of the human genome URL = http://www.nature.com/nature/journal/v431/n7011/full/nature03001.html Response Code = 0 ---------------------------------- ---------------------------------- Link = Genome sequence of the brown Norway rat yields insights into mammalian evolution URL = http://www.nature.com/nature/journal/v428/n6982/full/nature02426.html Response Code = 0 ---------------------------------- ---------------------------------- Link = Combining phylogenetic and hidden Markov models in biosequence analysis URL = http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=15285899 Response Code = 0 ---------------------------------- ---------------------------------- Link = The DNA sequence of human chromosome 7 URL = http://www.nature.com/nature/journal/v424/n6945/full/nature01782.html Response Code = 0 ---------------------------------- Count of links checked = 134 Count of error links = 14