--------------------------------------------------------------- papAnu2.trackDb.html : Differences exist between hgwbeta and hgw2 (RR fields taken from public MySql server, not individual machine) 2013a2014,2032 > refSeqComposite |
  • > refSeqComposite | RefSeq Select+MANE (subset) – Subset of RefSeq Curated, transcripts marked as > refSeqComposite | RefSeq Select or MANE Select. > refSeqComposite | A single Select transcript is chosen as representative for each protein-coding gene. > refSeqComposite | This track includes transcripts categorized as MANE, which are further agreed upon as > refSeqComposite | representative by both NCBI RefSeq and Ensembl/GENCODE, and have a 100% identical match > refSeqComposite | to a transcript in the Ensembl annotation. See refSeqComposite | href="https://www.ncbi.nlm.nih.gov/refseq/refseq_select/">NCBI RefSeq Select. > refSeqComposite | Note that we provide a separate track, refSeqComposite | target=_blank href="hgTrackUi?g=mane&db=hg38&c=chr22">MANE (hg38), > refSeqComposite | which contains only the MANE transcripts. > refSeqComposite |
  • > refSeqComposite |
  • > refSeqComposite | RefSeq HGMD (subset) – Subset of RefSeq Curated, transcripts annotated by the Human > refSeqComposite | Gene Mutation Database. This track is only available on the human genomes hg19 and hg38. > refSeqComposite | It is the most restricted RefSeq subset, targeting clinical diagnostics. > refSeqComposite |
  • > refSeqComposite | > refSeqComposite | 2016,2017c2035,2036 < refSeqComposite | The RefSeq All, RefSeq Curated, RefSeq Predicted, and < refSeqComposite | UCSC RefSeq tracks follow the display conventions for --- > refSeqComposite | The RefSeq All, RefSeq Curated, RefSeq Predicted, RefSeq HGMD, > refSeqComposite | RefSeq Select/MANE and UCSC RefSeq tracks follow the display conventions for 2127,2128c2146 < refSeqComposite | using the REST API, < refSeqComposite | Table Browser or --- > refSeqComposite | using the Table Browser or 2149a2168,2169 > refSeqComposite |
  • RefSeq HGMD - ncbiRefSeqHgmd
  • > refSeqComposite |
  • RefSeq Select+MANE - ncbiRefSeqSelect
  • 2251,2255c2271 < rmsk | Repbase Update is described in Jurka (2000) in the References section below. < rmsk | Some newer assemblies have been made with Dfam, not Repbase. You can < rmsk | find the details for how we make our database data here in our "makeDb/doc/" < rmsk | directory.

    --- > rmsk | Repbase Update is described in Jurka (2000) in the References section below.