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papAnu2.trackDb.html : Differences exist between hgwbeta and hgw2
(RR fields taken from public MySql server, not individual machine)
2013a2014,2032
> refSeqComposite |
> refSeqComposite | RefSeq Select+MANE (subset) – Subset of RefSeq Curated, transcripts marked as
> refSeqComposite | RefSeq Select or MANE Select.
> refSeqComposite | A single Select transcript is chosen as representative for each protein-coding gene.
> refSeqComposite | This track includes transcripts categorized as MANE, which are further agreed upon as
> refSeqComposite | representative by both NCBI RefSeq and Ensembl/GENCODE, and have a 100% identical match
> refSeqComposite | to a transcript in the Ensembl annotation. See refSeqComposite | href="https://www.ncbi.nlm.nih.gov/refseq/refseq_select/">NCBI RefSeq Select.
> refSeqComposite | Note that we provide a separate track, refSeqComposite | target=_blank href="hgTrackUi?g=mane&db=hg38&c=chr22">MANE (hg38),
> refSeqComposite | which contains only the MANE transcripts.
> refSeqComposite |
> refSeqComposite |
> refSeqComposite | RefSeq HGMD (subset) – Subset of RefSeq Curated, transcripts annotated by the Human
> refSeqComposite | Gene Mutation Database. This track is only available on the human genomes hg19 and hg38.
> refSeqComposite | It is the most restricted RefSeq subset, targeting clinical diagnostics.
> refSeqComposite |
> refSeqComposite |
> refSeqComposite |
2016,2017c2035,2036
< refSeqComposite | The RefSeq All, RefSeq Curated, RefSeq Predicted, and
< refSeqComposite | UCSC RefSeq tracks follow the display conventions for
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> refSeqComposite | The RefSeq All, RefSeq Curated, RefSeq Predicted, RefSeq HGMD,
> refSeqComposite | RefSeq Select/MANE and UCSC RefSeq tracks follow the display conventions for
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< refSeqComposite | using the REST API,
< refSeqComposite | Table Browser or
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> refSeqComposite | using the Table Browser or
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> refSeqComposite | RefSeq HGMD - ncbiRefSeqHgmd
> refSeqComposite | RefSeq Select+MANE - ncbiRefSeqSelect
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< rmsk | Repbase Update is described in Jurka (2000) in the References section below.
< rmsk | Some newer assemblies have been made with Dfam, not Repbase. You can
< rmsk | find the details for how we make our database data here in our "makeDb/doc/"
< rmsk | directory.
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> rmsk | Repbase Update is described in Jurka (2000) in the References section below.