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hg38.trackDb.html : Differences exist between hgwbeta and hgw2
(RR fields taken from public MySql server, not individual machine)
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< abSplice | AbSplice is a method that predicts aberrant splicing across human tissues, as described in Wagner,
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> abSplice | AbSplice is a method that predicts aberrant splicing across human tissues, as described in Wagner,
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< abSplice | Expression (GTEx) dataset.
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> abSplice | Expression (GTEx) dataset.
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< abSplice | place in a given tissue. The authors suggest three cutoffs which are represented by color in the track.
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> abSplice | place in a given tissue. The authors abSplice | >suggest three cutoffs which are represented by color in the track.
> abSplice |
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< abSplice | High (red) -
< abSplice | An AbSplice score over 0.2 indicates a high likelihood of aberrant splicing in at least one
< abSplice | tissue.
< abSplice | Medium (orange) -
< abSplice | A score between 0.05 and 0.2 indicates a medium likelihood.
< abSplice | Low (blue) -
< abSplice | A score between 0.01 and 0.05 indicates a low likelihood.
< abSplice | Scores below 0.01 are not displayed.
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> abSplice | High (red) -
> abSplice | An AbSplice score over 0.2 indicates a high likelihood of aberrant splicing in at least one tissue.
> abSplice | Medium (orange) -
> abSplice | A score between 0.05 and 0.2 indicates a medium likelihood.
> abSplice | Low (blue) -
> abSplice | A score between 0.01 and 0.05 indicates a low likelihood.
> abSplice | Scores below 0.01 are not displayed.
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< abSplice |
< abSplice |
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< abSplice | any item brings up a table with scores for all 48 GTEX tissues.
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> abSplice | any item brings up a table with scores for all 49 GTEX tissues.
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< abSplice | Data Integrator
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> abSplice | Data Integrator.
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< abSplice | mailing list archives
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> abSplice | mailing list archives
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< abSplice | Data Access FAQ
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> abSplice | Data Access FAQ
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< abSplice |
AbSplice scores are also available at the
< abSplice | public repository created by the authors.
< abSplice |
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> abSplice | Precomputed AbSplice-DNA scores in all 49 GTEx tissues are available at
> abSplice |
> abSplice | Zenodo.
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< abSplice | Data was converted from the files (AbSplice_DNA_hg38_snvs_high_scores.zip) provided by the authors
< abSplice | at zenodo.org. Files in the
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> abSplice | Data was converted from the files (AbSplice_DNA_ hg38 _snvs_high_scores.zip) provided by the authors
> abSplice | at abSplice | target="_blank">zenodo.org. Files in the
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< abSplice | their tissues were selected from the AbSplice_DNA fields and maximum scores calculated using
< abSplice | a custom
< abSplice | script.
< abSplice |
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> abSplice | their tissues were selected from the AbSplice_DNA fields and maximum scores, and then calculated
> abSplice | using a custom Python script, which can be found in the
> abSplice |
> abSplice | makeDoc from our GitHub repository.