---------------------------------------------------------------


mm10.trackDb.html : Differences exist between hgwbeta and hgw2 

(RR fields taken from public MySql server, not individual machine)

14933c14933
< mgcFullMrna | This track show alignments of mouse mRNAs from the
---
> mgcFullMrna | This track shows alignments of mouse mRNAs from the

14938c14938
< mgcFullMrna | clones for human, mouse, rat, xenopus, and zerbrafish genes.
---
> mgcFullMrna | clones for human, mouse, and rat genes.

14995,15068d14994
< mgcOrfeomeMrna | html
< mgcOrfeomeMrna | <h2>Description</h2>
< mgcOrfeomeMrna | 
< mgcOrfeomeMrna | <p>
< mgcOrfeomeMrna | These tracks show alignments of mouse mRNAs from the
< mgcOrfeomeMrna | <a href="https://genecollections.nci.nih.gov/MGC/" target="_blank">Mammalian Gene Collection</a>
< mgcOrfeomeMrna | (MGC) and <a href="http://www.orfeomecollaboration.org/" target="_blank">
< mgcOrfeomeMrna | ORFeome Collaboration</a> having full-length open reading frames (ORFs) to the genome.
< mgcOrfeomeMrna | The goal of the Mammalian Gene Collection is to provide researchers with
< mgcOrfeomeMrna | unrestricted access to sequence-validated full-length protein-coding cDNA
< mgcOrfeomeMrna | clones for human, mouse, and rat genes.  The ORFeome project extended MGC to
< mgcOrfeomeMrna | provide additional human, mouse, and zebrafish clones.
< mgcOrfeomeMrna | </p>
< mgcOrfeomeMrna | 
< mgcOrfeomeMrna | <h2>Display Conventions and Configuration</h2>
< mgcOrfeomeMrna | 
< mgcOrfeomeMrna | <p>
< mgcOrfeomeMrna | The track follows the display conventions for
< mgcOrfeomeMrna | <a href="/goldenPath/help/hgTracksHelp.html#GeneDisplay" target="_blank">gene prediction
< mgcOrfeomeMrna | tracks</a>.
< mgcOrfeomeMrna | </p>
< mgcOrfeomeMrna | 
< mgcOrfeomeMrna | <p>
< mgcOrfeomeMrna | An optional codon coloring feature is available for quick
< mgcOrfeomeMrna | validation and comparison of gene predictions.
< mgcOrfeomeMrna | To display codon colors, select the <em>genomic codons</em> option from the
< mgcOrfeomeMrna | <em>Color track by codons</em> pull-down menu. For more information
< mgcOrfeomeMrna | about this feature, go to the
< mgcOrfeomeMrna | <a href="/goldenPath/help/hgCodonColoring.html" target="_blank">
< mgcOrfeomeMrna | Coloring Gene Predictions and Annotations by Codon</a> page.
< mgcOrfeomeMrna | </p>
< mgcOrfeomeMrna | 
< mgcOrfeomeMrna | <h2>Methods</h2>
< mgcOrfeomeMrna | 
< mgcOrfeomeMrna | <p>
< mgcOrfeomeMrna | GenBank mouse MGC mRNAs identified as having full-length ORFs
< mgcOrfeomeMrna | were aligned against the genome using blat. When a single mRNA
< mgcOrfeomeMrna | aligned in multiple places, the alignment having the highest base identity was
< mgcOrfeomeMrna | found.  Only alignments having a base identity level within 1% of
< mgcOrfeomeMrna | the best and at least 95% base identity with the genomic sequence
< mgcOrfeomeMrna | were kept.
< mgcOrfeomeMrna | </p>
< mgcOrfeomeMrna | 
< mgcOrfeomeMrna | <h2>Credits</h2>
< mgcOrfeomeMrna | 
< mgcOrfeomeMrna | <p>
< mgcOrfeomeMrna | The mouse MGC full-length mRNA track was produced at UCSC from
< mgcOrfeomeMrna | mRNA sequence data submitted to
< mgcOrfeomeMrna | <a href="https://www.ncbi.nlm.nih.gov/genbank/" target="_blank">
< mgcOrfeomeMrna | GenBank</a> by the Mammalian Gene Collection project.
< mgcOrfeomeMrna | </p>
< mgcOrfeomeMrna | 
< mgcOrfeomeMrna | <p>
< mgcOrfeomeMrna | Visit the ORFeome Collaboration
< mgcOrfeomeMrna | <a href="http://www.orfeomecollaboration.org/?pageID=32" target="_blank">
< mgcOrfeomeMrna | members page</a> for a list of credits and references.
< mgcOrfeomeMrna | </p>
< mgcOrfeomeMrna | 
< mgcOrfeomeMrna | <h2>References</h2>
< mgcOrfeomeMrna | 
< mgcOrfeomeMrna | <p>
< mgcOrfeomeMrna | Mammalian Gene Collection project
< mgcOrfeomeMrna | <a href="https://genecollections.nci.nih.gov/MGC/Info/References" target="_blank">references</a>.
< mgcOrfeomeMrna | </p>
< mgcOrfeomeMrna | 
< mgcOrfeomeMrna | <p>
< mgcOrfeomeMrna | Kent WJ.
< mgcOrfeomeMrna | <a href="https://genome.cshlp.org/content/12/4/656.full" target="_blank">
< mgcOrfeomeMrna | BLAT--the BLAST-like alignment tool</a>.
< mgcOrfeomeMrna | <em>Genome Res</em>. 2002 Apr;12(4):656-64.
< mgcOrfeomeMrna | PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/11932250" target="_blank">11932250</a>; PMC: <a
< mgcOrfeomeMrna | href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC187518/" target="_blank">PMC187518</a>
< mgcOrfeomeMrna | </p>
< mgcOrfeomeMrna | 

16691c16617
< orfeomeMrna | This track show alignments of mouse clones from the
---
> orfeomeMrna | This track shows alignments of mouse clones from the

16697c16623
< orfeomeMrna | at least one fully-sequenced full-ORF clone for each human, mouse, and zebrafish gene.
---
> orfeomeMrna | at least one fully-sequenced full-ORF clone for each human gene.&quot;

27719,27724c27645,27648
< uniprot | Features in the &quot;UniProt Modifications&quot; (modified residues) track are drawn in 
< uniprot |  <span style="color: rgb(200,200,0)"><b>light green</b></span>. Disulfide bonds are shown in 
< uniprot |  <span style="color: rgb(100,100,100)"><b>dark grey</b></span>. Topological domains
< uniprot |  in <span style="color: rgb(100,0,0)"><b>maroon</b></span> and zinc finger regions in 
< uniprot |  <span style="color: rgb(100,100,0)"><b>olive green</b></span>.
< uniprot | </p>
---
> uniprot | In the &quot;UniProt Modifications&quot; track, lipoification sites are highlighted in 
> uniprot | <span style="color: rgb(12,12,120)"><b>dark blue</b></span>, glycosylation sites in 
> uniprot | <span style="color: rgb(0,100,100)"><b>dark green</b></span>, and phosphorylation in 
> uniprot | <span style="color: rgb(200,200,0)"><b>light green</b></span>.</p>