--------------------------------------------------------------- gorGor4.trackDb.html : Differences exist between hgwbeta and hgw2 (RR fields taken from public MySql server, not individual machine) 893,894c893,894 < evaSnp4 | and small insertions and deletions (indels) < evaSnp4 | from the European Variation Archive --- > evaSnp4 | and small insertions and deletions (indels) — collectively Simple > evaSnp4 | Nucleotide Variants (SNVs) — from the European Variation Archive 1108,1109c1108,1109 < evaSnp5 | and small insertions and deletions (indels) < evaSnp5 | from the European Variation Archive --- > evaSnp5 | and small insertions and deletions (indels) — collectively Simple > evaSnp5 | Nucleotide Variants (SNVs) — from the European Variation Archive 2039,2051d2038 < rmsk | < rmsk |
< rmsk | When analyzing the data tables of this track, keep in mind that Repbase is not the same < rmsk | as the Repeatmasker sequence database and that the repeat names in the < rmsk | Repeatmasker output are not the same as the sequence names in the Repeatmasker < rmsk | database. Concretely, you can find a name such as "L1PA4" in the Repeatmasker < rmsk | output and this track, but there is not necessarily a single sequence "L1PA4" < rmsk | in the Repeatmasker database. This is because Repeatmasker creates annotations < rmsk | by joining matches to partial pieces of the database together so there is no < rmsk | 1:1 relationship between its sequence database and the annotations. To learn < rmsk | more, you can read the Repeatmasker paper, its source code or reach out to the < rmsk | Repeatmasker authors, your local expert on transposable elements or us. < rmsk |