---------------------------------------------------------------


mm8.trackDb.html : Differences exist between hgwbeta and hgw2 

(RR fields taken from public MySql server, not individual machine)

4c4
< affyAllExonProbes | The <A HREF="https://www.affymetrix.com:443/estore/products_services/arrays/index.affx"
---
> affyAllExonProbes | The <A HREF="http://www.affymetrix.com/estore/products_services/arrays/index.affx"

117c117
< affyAllExonProbes | <B><A HREF="https://grib.upf.edu/" TARGET=_blank>SGP Genes</A>: </B> 
---
> affyAllExonProbes | <B><A HREF="http://grib.imim.es" TARGET=_blank>SGP Genes</A>: </B> 

196c196
< affyExonTissues | <LI><A HREF="https://assets.thermofisher.com/TFS-Assets/LSG/brochures/plier_technote.pdf" target="_blank"
---
> affyExonTissues | <LI><A HREF="http://tools.thermofisher.com/content/sfs/brochures/plier_technote.pdf" target="_blank"

240c240
< affyGnfU74A | Affymetrix's <A HREF="https://www.affymetrix.com:443/analysis/index.affx"
---
> affyGnfU74A | Affymetrix's <A HREF="http://www.affymetrix.com/analysis/index.affx"

281c281
< affyGnfU74B | Affymetrix's <A HREF="https://www.affymetrix.com:443/analysis/index.affx"
---
> affyGnfU74B | Affymetrix's <A HREF="http://www.affymetrix.com/analysis/index.affx"

321c321
< affyGnfU74C | Affymetrix's <A HREF="https://www.affymetrix.com:443/analysis/index.affx"
---
> affyGnfU74C | Affymetrix's <A HREF="http://www.affymetrix.com/analysis/index.affx"

348c348
< affyMOE430 | <A HREF="https://www.affymetrix.com:443/support/technical/byproduct.affx?product=moe430"
---
> affyMOE430 | <A HREF="http://www.affymetrix.com/support/technical/byproduct.affx?product=moe430"

368c368
< affyU74 | <A HREF="https://www.affymetrix.com:443/support/technical/byproduct.affx?product=mgu74"
---
> affyU74 | <A HREF="http://www.affymetrix.com/support/technical/byproduct.affx?product=mgu74"

405c405
< allenBrainAli | within the <A HREF="https://community.brain-map.org/c/how-to/mouse-atlas/22"
---
> allenBrainAli | within the <A HREF="http://help.brain-map.org/display/mousebrain/Documentation"

1179,1182c1179,1183
< chainAnoCar1 | LASTZ was developed at
< chainAnoCar1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainAnoCar1 | Bob Harris.
< chainAnoCar1 | </P>
---
> chainAnoCar1 | Lastz (previously known as blastz) was developed at
> chainAnoCar1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainAnoCar1 | TARGET=_blank>Pennsylvania State University</A> by 
> chainAnoCar1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainAnoCar1 | Ross Hardison.</P>

1185c1186
< chainAnoCar1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainAnoCar1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

1376,1379c1377,1381
< chainBosTau3 | LASTZ was developed at
< chainBosTau3 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainBosTau3 | Bob Harris.
< chainBosTau3 | </P>
---
> chainBosTau3 | Lastz (previously known as blastz) was developed at
> chainBosTau3 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainBosTau3 | TARGET=_blank>Pennsylvania State University</A> by 
> chainBosTau3 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainBosTau3 | Ross Hardison.</P>

1382c1384
< chainBosTau3 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainBosTau3 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

1573,1576c1575,1579
< chainCanFam2 | LASTZ was developed at
< chainCanFam2 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainCanFam2 | Bob Harris.
< chainCanFam2 | </P>
---
> chainCanFam2 | Lastz (previously known as blastz) was developed at
> chainCanFam2 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainCanFam2 | TARGET=_blank>Pennsylvania State University</A> by 
> chainCanFam2 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainCanFam2 | Ross Hardison.</P>

1579c1582
< chainCanFam2 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainCanFam2 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

1770,1773c1773,1777
< chainDanRer4 | LASTZ was developed at
< chainDanRer4 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainDanRer4 | Bob Harris.
< chainDanRer4 | </P>
---
> chainDanRer4 | Lastz (previously known as blastz) was developed at
> chainDanRer4 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainDanRer4 | TARGET=_blank>Pennsylvania State University</A> by 
> chainDanRer4 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainDanRer4 | Ross Hardison.</P>

1776c1780
< chainDanRer4 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainDanRer4 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

1967,1970c1971,1975
< chainEquCab1 | LASTZ was developed at
< chainEquCab1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainEquCab1 | Bob Harris.
< chainEquCab1 | </P>
---
> chainEquCab1 | Lastz (previously known as blastz) was developed at
> chainEquCab1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainEquCab1 | TARGET=_blank>Pennsylvania State University</A> by 
> chainEquCab1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainEquCab1 | Ross Hardison.</P>

1973c1978
< chainEquCab1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainEquCab1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

2164,2167c2169,2173
< chainFelCat3 | LASTZ was developed at
< chainFelCat3 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainFelCat3 | Bob Harris.
< chainFelCat3 | </P>
---
> chainFelCat3 | Lastz (previously known as blastz) was developed at
> chainFelCat3 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainFelCat3 | TARGET=_blank>Pennsylvania State University</A> by 
> chainFelCat3 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainFelCat3 | Ross Hardison.</P>

2170c2176
< chainFelCat3 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainFelCat3 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

2361,2364c2367,2371
< chainFr1 | LASTZ was developed at
< chainFr1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainFr1 | Bob Harris.
< chainFr1 | </P>
---
> chainFr1 | Lastz (previously known as blastz) was developed at
> chainFr1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainFr1 | TARGET=_blank>Pennsylvania State University</A> by 
> chainFr1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainFr1 | Ross Hardison.</P>

2367c2374
< chainFr1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainFr1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

2558,2561c2565,2569
< chainGalGal3 | LASTZ was developed at
< chainGalGal3 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainGalGal3 | Bob Harris.
< chainGalGal3 | </P>
---
> chainGalGal3 | Lastz (previously known as blastz) was developed at
> chainGalGal3 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainGalGal3 | TARGET=_blank>Pennsylvania State University</A> by 
> chainGalGal3 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainGalGal3 | Ross Hardison.</P>

2564c2572
< chainGalGal3 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainGalGal3 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

2755,2758c2763,2767
< chainGasAcu1 | LASTZ was developed at
< chainGasAcu1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainGasAcu1 | Bob Harris.
< chainGasAcu1 | </P>
---
> chainGasAcu1 | Lastz (previously known as blastz) was developed at
> chainGasAcu1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainGasAcu1 | TARGET=_blank>Pennsylvania State University</A> by 
> chainGasAcu1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainGasAcu1 | Ross Hardison.</P>

2761c2770
< chainGasAcu1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainGasAcu1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

2952,2955c2961,2965
< chainHg18 | LASTZ was developed at
< chainHg18 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainHg18 | Bob Harris.
< chainHg18 | </P>
---
> chainHg18 | Lastz (previously known as blastz) was developed at
> chainHg18 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainHg18 | TARGET=_blank>Pennsylvania State University</A> by 
> chainHg18 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainHg18 | Ross Hardison.</P>

2958c2968
< chainHg18 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainHg18 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

3149,3152c3159,3163
< chainMonDom4 | LASTZ was developed at
< chainMonDom4 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainMonDom4 | Bob Harris.
< chainMonDom4 | </P>
---
> chainMonDom4 | Lastz (previously known as blastz) was developed at
> chainMonDom4 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainMonDom4 | TARGET=_blank>Pennsylvania State University</A> by 
> chainMonDom4 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainMonDom4 | Ross Hardison.</P>

3155c3166
< chainMonDom4 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainMonDom4 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

3346,3349c3357,3361
< chainNetAnoCar1 | LASTZ was developed at
< chainNetAnoCar1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetAnoCar1 | Bob Harris.
< chainNetAnoCar1 | </P>
---
> chainNetAnoCar1 | Lastz (previously known as blastz) was developed at
> chainNetAnoCar1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetAnoCar1 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetAnoCar1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetAnoCar1 | Ross Hardison.</P>

3352c3364
< chainNetAnoCar1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetAnoCar1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

3547,3550c3559,3563
< chainNetBosTau3 | LASTZ was developed at
< chainNetBosTau3 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetBosTau3 | Bob Harris.
< chainNetBosTau3 | </P>
---
> chainNetBosTau3 | Lastz (previously known as blastz) was developed at
> chainNetBosTau3 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetBosTau3 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetBosTau3 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetBosTau3 | Ross Hardison.</P>

3553c3566
< chainNetBosTau3 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetBosTau3 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

3748,3751c3761,3765
< chainNetCanFam2 | LASTZ was developed at
< chainNetCanFam2 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetCanFam2 | Bob Harris.
< chainNetCanFam2 | </P>
---
> chainNetCanFam2 | Lastz (previously known as blastz) was developed at
> chainNetCanFam2 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetCanFam2 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetCanFam2 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetCanFam2 | Ross Hardison.</P>

3754c3768
< chainNetCanFam2 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetCanFam2 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

3949,3952c3963,3967
< chainNetDanRer4 | LASTZ was developed at
< chainNetDanRer4 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetDanRer4 | Bob Harris.
< chainNetDanRer4 | </P>
---
> chainNetDanRer4 | Lastz (previously known as blastz) was developed at
> chainNetDanRer4 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetDanRer4 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetDanRer4 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetDanRer4 | Ross Hardison.</P>

3955c3970
< chainNetDanRer4 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetDanRer4 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

4150,4153c4165,4169
< chainNetEquCab1 | LASTZ was developed at
< chainNetEquCab1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetEquCab1 | Bob Harris.
< chainNetEquCab1 | </P>
---
> chainNetEquCab1 | Lastz (previously known as blastz) was developed at
> chainNetEquCab1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetEquCab1 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetEquCab1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetEquCab1 | Ross Hardison.</P>

4156c4172
< chainNetEquCab1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetEquCab1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

4351,4354c4367,4371
< chainNetFelCat3 | LASTZ was developed at
< chainNetFelCat3 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetFelCat3 | Bob Harris.
< chainNetFelCat3 | </P>
---
> chainNetFelCat3 | Lastz (previously known as blastz) was developed at
> chainNetFelCat3 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetFelCat3 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetFelCat3 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetFelCat3 | Ross Hardison.</P>

4357c4374
< chainNetFelCat3 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetFelCat3 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

4552,4555c4569,4573
< chainNetFr1 | LASTZ was developed at
< chainNetFr1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetFr1 | Bob Harris.
< chainNetFr1 | </P>
---
> chainNetFr1 | Lastz (previously known as blastz) was developed at
> chainNetFr1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetFr1 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetFr1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetFr1 | Ross Hardison.</P>

4558c4576
< chainNetFr1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetFr1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

4753,4756c4771,4775
< chainNetGalGal3 | LASTZ was developed at
< chainNetGalGal3 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetGalGal3 | Bob Harris.
< chainNetGalGal3 | </P>
---
> chainNetGalGal3 | Lastz (previously known as blastz) was developed at
> chainNetGalGal3 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetGalGal3 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetGalGal3 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetGalGal3 | Ross Hardison.</P>

4759c4778
< chainNetGalGal3 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetGalGal3 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

4954,4957c4973,4977
< chainNetGasAcu1 | LASTZ was developed at
< chainNetGasAcu1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetGasAcu1 | Bob Harris.
< chainNetGasAcu1 | </P>
---
> chainNetGasAcu1 | Lastz (previously known as blastz) was developed at
> chainNetGasAcu1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetGasAcu1 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetGasAcu1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetGasAcu1 | Ross Hardison.</P>

4960c4980
< chainNetGasAcu1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetGasAcu1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

5155,5158c5175,5179
< chainNetHg18 | LASTZ was developed at
< chainNetHg18 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetHg18 | Bob Harris.
< chainNetHg18 | </P>
---
> chainNetHg18 | Lastz (previously known as blastz) was developed at
> chainNetHg18 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetHg18 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetHg18 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetHg18 | Ross Hardison.</P>

5161c5182
< chainNetHg18 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetHg18 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

5356,5359c5377,5381
< chainNetMonDom4 | LASTZ was developed at
< chainNetMonDom4 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetMonDom4 | Bob Harris.
< chainNetMonDom4 | </P>
---
> chainNetMonDom4 | Lastz (previously known as blastz) was developed at
> chainNetMonDom4 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetMonDom4 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetMonDom4 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetMonDom4 | Ross Hardison.</P>

5362c5384
< chainNetMonDom4 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetMonDom4 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

5557,5560c5579,5583
< chainNetOrnAna1 | LASTZ was developed at
< chainNetOrnAna1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetOrnAna1 | Bob Harris.
< chainNetOrnAna1 | </P>
---
> chainNetOrnAna1 | Lastz (previously known as blastz) was developed at
> chainNetOrnAna1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetOrnAna1 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetOrnAna1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetOrnAna1 | Ross Hardison.</P>

5563c5586
< chainNetOrnAna1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetOrnAna1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

5758,5761c5781,5785
< chainNetPanTro2 | LASTZ was developed at
< chainNetPanTro2 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetPanTro2 | Bob Harris.
< chainNetPanTro2 | </P>
---
> chainNetPanTro2 | Lastz (previously known as blastz) was developed at
> chainNetPanTro2 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetPanTro2 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetPanTro2 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetPanTro2 | Ross Hardison.</P>

5764c5788
< chainNetPanTro2 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetPanTro2 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

5959,5962c5983,5987
< chainNetRheMac2 | LASTZ was developed at
< chainNetRheMac2 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetRheMac2 | Bob Harris.
< chainNetRheMac2 | </P>
---
> chainNetRheMac2 | Lastz (previously known as blastz) was developed at
> chainNetRheMac2 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetRheMac2 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetRheMac2 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetRheMac2 | Ross Hardison.</P>

5965c5990
< chainNetRheMac2 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetRheMac2 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

6160,6163c6185,6189
< chainNetRn4 | LASTZ was developed at
< chainNetRn4 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetRn4 | Bob Harris.
< chainNetRn4 | </P>
---
> chainNetRn4 | Lastz (previously known as blastz) was developed at
> chainNetRn4 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetRn4 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetRn4 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetRn4 | Ross Hardison.</P>

6166c6192
< chainNetRn4 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetRn4 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

6361,6364c6387,6391
< chainNetTetNig1 | LASTZ was developed at
< chainNetTetNig1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetTetNig1 | Bob Harris.
< chainNetTetNig1 | </P>
---
> chainNetTetNig1 | Lastz (previously known as blastz) was developed at
> chainNetTetNig1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetTetNig1 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetTetNig1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetTetNig1 | Ross Hardison.</P>

6367c6394
< chainNetTetNig1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetTetNig1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

6562,6565c6589,6593
< chainNetXenTro2 | LASTZ was developed at
< chainNetXenTro2 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainNetXenTro2 | Bob Harris.
< chainNetXenTro2 | </P>
---
> chainNetXenTro2 | Lastz (previously known as blastz) was developed at
> chainNetXenTro2 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainNetXenTro2 | TARGET=_blank>Pennsylvania State University</A> by 
> chainNetXenTro2 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainNetXenTro2 | Ross Hardison.</P>

6568c6596
< chainNetXenTro2 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainNetXenTro2 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

6763,6766c6791,6795
< chainOrnAna1 | LASTZ was developed at
< chainOrnAna1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainOrnAna1 | Bob Harris.
< chainOrnAna1 | </P>
---
> chainOrnAna1 | Lastz (previously known as blastz) was developed at
> chainOrnAna1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainOrnAna1 | TARGET=_blank>Pennsylvania State University</A> by 
> chainOrnAna1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainOrnAna1 | Ross Hardison.</P>

6769c6798
< chainOrnAna1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainOrnAna1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

6960,6963c6989,6993
< chainPanTro2 | LASTZ was developed at
< chainPanTro2 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainPanTro2 | Bob Harris.
< chainPanTro2 | </P>
---
> chainPanTro2 | Lastz (previously known as blastz) was developed at
> chainPanTro2 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainPanTro2 | TARGET=_blank>Pennsylvania State University</A> by 
> chainPanTro2 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainPanTro2 | Ross Hardison.</P>

6966c6996
< chainPanTro2 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainPanTro2 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

7157,7160c7187,7191
< chainRheMac2 | LASTZ was developed at
< chainRheMac2 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainRheMac2 | Bob Harris.
< chainRheMac2 | </P>
---
> chainRheMac2 | Lastz (previously known as blastz) was developed at
> chainRheMac2 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainRheMac2 | TARGET=_blank>Pennsylvania State University</A> by 
> chainRheMac2 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainRheMac2 | Ross Hardison.</P>

7163c7194
< chainRheMac2 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainRheMac2 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

7354,7357c7385,7389
< chainRn4 | LASTZ was developed at
< chainRn4 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainRn4 | Bob Harris.
< chainRn4 | </P>
---
> chainRn4 | Lastz (previously known as blastz) was developed at
> chainRn4 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainRn4 | TARGET=_blank>Pennsylvania State University</A> by 
> chainRn4 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainRn4 | Ross Hardison.</P>

7360c7392
< chainRn4 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainRn4 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

7551,7554c7583,7587
< chainTetNig1 | LASTZ was developed at
< chainTetNig1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainTetNig1 | Bob Harris.
< chainTetNig1 | </P>
---
> chainTetNig1 | Lastz (previously known as blastz) was developed at
> chainTetNig1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainTetNig1 | TARGET=_blank>Pennsylvania State University</A> by 
> chainTetNig1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainTetNig1 | Ross Hardison.</P>

7557c7590
< chainTetNig1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainTetNig1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

7748,7751c7781,7785
< chainXenTro2 | LASTZ was developed at
< chainXenTro2 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< chainXenTro2 | Bob Harris.
< chainXenTro2 | </P>
---
> chainXenTro2 | Lastz (previously known as blastz) was developed at
> chainXenTro2 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> chainXenTro2 | TARGET=_blank>Pennsylvania State University</A> by 
> chainXenTro2 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> chainXenTro2 | Ross Hardison.</P>

7754c7788
< chainXenTro2 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> chainXenTro2 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

7989c8023
< cons17way | <A HREF="https://siepellab.labsites.cshl.edu/"
---
> cons17way | <A HREF="http://siepellab.labsites.cshl.edu/"

8829c8863
< genomicSuperDups | at the <A HREF="https://eichlerlab.gs.washington.edu/" 
---
> genomicSuperDups | at the <A HREF="http://eichlerlab.gs.washington.edu/" 

8993c9027
< igtc |     <TD><A HREF="https://egtc.jp/action/main/index" TARGET=_BLANK>Exchangeable Gene
---
> igtc |     <TD><A HREF="http://egtc.jp/action/main/index" TARGET=_BLANK>Exchangeable Gene

9197c9231
< jaxAllele | <A HREF="https://www.informatics.jax.org//" TARGET=_BLANK>Mouse Genome 
---
> jaxAllele | <A HREF="http://www.informatics.jax.org/" TARGET=_BLANK>Mouse Genome 

9224c9258
< jaxAllele | <A HREF="https://www.informatics.jax.org//" TARGET=_BLANK>MGI</A> 
---
> jaxAllele | <A HREF="http://www.informatics.jax.org/" TARGET=_BLANK>MGI</A> 

9233c9267
< jaxPhenotype | <A HREF="https://www.informatics.jax.org//" TARGET=_BLANK>Mouse Genome 
---
> jaxPhenotype | <A HREF="http://www.informatics.jax.org/" TARGET=_BLANK>Mouse Genome 

9236c9270
< jaxPhenotype | <A HREF="https://www.informatics.jax.org//vocab/mp_ontology/" 
---
> jaxPhenotype | <A HREF="http://www.informatics.jax.org/vocab/mp_ontology/" 

9243c9277
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005375"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005375"

9246c9280
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005386"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005386"

9249c9283
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005385"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005385"

9252c9286
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005384"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005384"

9255c9289
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005382"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005382"

9258c9292
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005381"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005381"

9261c9295
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005380"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005380"

9264c9298
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0010768"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0010768"

9267c9301
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005379"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005379"

9270c9304
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005378"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005378"

9273c9307
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005377"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005377"

9276c9310
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005397"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005397"

9279c9313
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005376"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005376"

9282c9316
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005387"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005387"

9285c9319
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0010771"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0010771"

9288c9322
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0010768"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0010768"

9291c9325
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005371"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005371"

9294c9328
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005370"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005370"

9297c9331
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0010768"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0010768"

9300c9334
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005369"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005369"

9303c9337
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0003631"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0003631"

9306c9340
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0001186"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0001186"

9309c9343
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0010768"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0010768"

9312c9346
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005367"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005367"

9315c9349
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005389"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005389"

9318c9352
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005388"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005388"

9321c9355
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005390"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005390"

9324c9358
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0010771"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0010771"

9327c9361
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005394"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005394"

9330c9364
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0010771"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0010771"

9333c9367
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0002006"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0002006"

9336c9370
< jaxPhenotype |     <TD><A HREF="https://www.informatics.jax.org//vocab/mp_ontology/MP:0005391"
---
> jaxPhenotype |     <TD><A HREF="http://www.informatics.jax.org/vocab/mp_ontology/MP:0005391"

9353c9387
< jaxPhenotype | <A HREF="https://www.informatics.jax.org//" TARGET=_BLANK>MGI</A> 
---
> jaxPhenotype | <A HREF="http://www.informatics.jax.org/" TARGET=_BLANK>MGI</A> 

9363c9397
< jaxQtl | <A HREF="https://www.informatics.jax.org//" TARGET=_BLANK>
---
> jaxQtl | <A HREF="http://www.informatics.jax.org/" TARGET=_BLANK>

9370c9404
< jaxQtl | <A HREF="https://www.informatics.jax.org//" TARGET=_BLANK>MGI</A> 
---
> jaxQtl | <A HREF="http://www.informatics.jax.org/" TARGET=_BLANK>MGI</A> 

9380c9414
< jaxRepTranscript | <A HREF="https://www.informatics.jax.org//" TARGET=_BLANK>Mouse Genome 
---
> jaxRepTranscript | <A HREF="http://www.informatics.jax.org/" TARGET=_BLANK>Mouse Genome 

9388c9422
< jaxRepTranscript | <A HREF="https://www.informatics.jax.org//" TARGET=_BLANK>MGI</A>.
---
> jaxRepTranscript | <A HREF="http://www.informatics.jax.org/" TARGET=_BLANK>MGI</A>.

9396c9430
< jaxRepTranscript | <A HREF="https://www.informatics.jax.org//" TARGET=_BLANK>MGI</A> 
---
> jaxRepTranscript | <A HREF="http://www.informatics.jax.org/" TARGET=_BLANK>MGI</A> 

9531c9565
< mgcFullMrna | This track show alignments of mouse mRNAs from the
---
> mgcFullMrna | This track shows alignments of mouse mRNAs from the

9536c9570
< mgcFullMrna | clones for human, mouse, rat, xenopus, and zerbrafish genes.
---
> mgcFullMrna | clones for human, mouse, and rat genes.

10016c10050
< multiz17way | <A HREF="https://siepellab.labsites.cshl.edu/"
---
> multiz17way | <A HREF="http://siepellab.labsites.cshl.edu/"

10262,10265c10296,10300
< netAnoCar1 | LASTZ was developed at
< netAnoCar1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netAnoCar1 | Bob Harris.
< netAnoCar1 | </P>
---
> netAnoCar1 | Lastz (previously known as blastz) was developed at
> netAnoCar1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netAnoCar1 | TARGET=_blank>Pennsylvania State University</A> by 
> netAnoCar1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netAnoCar1 | Ross Hardison.</P>

10268c10303
< netAnoCar1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netAnoCar1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

10459,10462c10494,10498
< netBosTau3 | LASTZ was developed at
< netBosTau3 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netBosTau3 | Bob Harris.
< netBosTau3 | </P>
---
> netBosTau3 | Lastz (previously known as blastz) was developed at
> netBosTau3 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netBosTau3 | TARGET=_blank>Pennsylvania State University</A> by 
> netBosTau3 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netBosTau3 | Ross Hardison.</P>

10465c10501
< netBosTau3 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netBosTau3 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

10656,10659c10692,10696
< netCanFam2 | LASTZ was developed at
< netCanFam2 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netCanFam2 | Bob Harris.
< netCanFam2 | </P>
---
> netCanFam2 | Lastz (previously known as blastz) was developed at
> netCanFam2 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netCanFam2 | TARGET=_blank>Pennsylvania State University</A> by 
> netCanFam2 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netCanFam2 | Ross Hardison.</P>

10662c10699
< netCanFam2 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netCanFam2 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

10853,10856c10890,10894
< netDanRer4 | LASTZ was developed at
< netDanRer4 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netDanRer4 | Bob Harris.
< netDanRer4 | </P>
---
> netDanRer4 | Lastz (previously known as blastz) was developed at
> netDanRer4 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netDanRer4 | TARGET=_blank>Pennsylvania State University</A> by 
> netDanRer4 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netDanRer4 | Ross Hardison.</P>

10859c10897
< netDanRer4 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netDanRer4 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

11050,11053c11088,11092
< netEquCab1 | LASTZ was developed at
< netEquCab1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netEquCab1 | Bob Harris.
< netEquCab1 | </P>
---
> netEquCab1 | Lastz (previously known as blastz) was developed at
> netEquCab1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netEquCab1 | TARGET=_blank>Pennsylvania State University</A> by 
> netEquCab1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netEquCab1 | Ross Hardison.</P>

11056c11095
< netEquCab1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netEquCab1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

11247,11250c11286,11290
< netFelCat3 | LASTZ was developed at
< netFelCat3 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netFelCat3 | Bob Harris.
< netFelCat3 | </P>
---
> netFelCat3 | Lastz (previously known as blastz) was developed at
> netFelCat3 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netFelCat3 | TARGET=_blank>Pennsylvania State University</A> by 
> netFelCat3 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netFelCat3 | Ross Hardison.</P>

11253c11293
< netFelCat3 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netFelCat3 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

11444,11447c11484,11488
< netFr1 | LASTZ was developed at
< netFr1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netFr1 | Bob Harris.
< netFr1 | </P>
---
> netFr1 | Lastz (previously known as blastz) was developed at
> netFr1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netFr1 | TARGET=_blank>Pennsylvania State University</A> by 
> netFr1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netFr1 | Ross Hardison.</P>

11450c11491
< netFr1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netFr1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

11641,11644c11682,11686
< netGalGal3 | LASTZ was developed at
< netGalGal3 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netGalGal3 | Bob Harris.
< netGalGal3 | </P>
---
> netGalGal3 | Lastz (previously known as blastz) was developed at
> netGalGal3 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netGalGal3 | TARGET=_blank>Pennsylvania State University</A> by 
> netGalGal3 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netGalGal3 | Ross Hardison.</P>

11647c11689
< netGalGal3 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netGalGal3 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

11838,11841c11880,11884
< netGasAcu1 | LASTZ was developed at
< netGasAcu1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netGasAcu1 | Bob Harris.
< netGasAcu1 | </P>
---
> netGasAcu1 | Lastz (previously known as blastz) was developed at
> netGasAcu1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netGasAcu1 | TARGET=_blank>Pennsylvania State University</A> by 
> netGasAcu1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netGasAcu1 | Ross Hardison.</P>

11844c11887
< netGasAcu1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netGasAcu1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

12035,12038c12078,12082
< netHg18 | LASTZ was developed at
< netHg18 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netHg18 | Bob Harris.
< netHg18 | </P>
---
> netHg18 | Lastz (previously known as blastz) was developed at
> netHg18 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netHg18 | TARGET=_blank>Pennsylvania State University</A> by 
> netHg18 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netHg18 | Ross Hardison.</P>

12041c12085
< netHg18 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netHg18 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

12232,12235c12276,12280
< netMonDom4 | LASTZ was developed at
< netMonDom4 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netMonDom4 | Bob Harris.
< netMonDom4 | </P>
---
> netMonDom4 | Lastz (previously known as blastz) was developed at
> netMonDom4 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netMonDom4 | TARGET=_blank>Pennsylvania State University</A> by 
> netMonDom4 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netMonDom4 | Ross Hardison.</P>

12238c12283
< netMonDom4 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netMonDom4 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

12429,12432c12474,12478
< netOrnAna1 | LASTZ was developed at
< netOrnAna1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netOrnAna1 | Bob Harris.
< netOrnAna1 | </P>
---
> netOrnAna1 | Lastz (previously known as blastz) was developed at
> netOrnAna1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netOrnAna1 | TARGET=_blank>Pennsylvania State University</A> by 
> netOrnAna1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netOrnAna1 | Ross Hardison.</P>

12435c12481
< netOrnAna1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netOrnAna1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

12626,12629c12672,12676
< netPanTro2 | LASTZ was developed at
< netPanTro2 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netPanTro2 | Bob Harris.
< netPanTro2 | </P>
---
> netPanTro2 | Lastz (previously known as blastz) was developed at
> netPanTro2 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netPanTro2 | TARGET=_blank>Pennsylvania State University</A> by 
> netPanTro2 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netPanTro2 | Ross Hardison.</P>

12632c12679
< netPanTro2 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netPanTro2 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

12823,12826c12870,12874
< netRheMac2 | LASTZ was developed at
< netRheMac2 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netRheMac2 | Bob Harris.
< netRheMac2 | </P>
---
> netRheMac2 | Lastz (previously known as blastz) was developed at
> netRheMac2 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netRheMac2 | TARGET=_blank>Pennsylvania State University</A> by 
> netRheMac2 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netRheMac2 | Ross Hardison.</P>

12829c12877
< netRheMac2 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netRheMac2 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

13020,13023c13068,13072
< netRn4 | LASTZ was developed at
< netRn4 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netRn4 | Bob Harris.
< netRn4 | </P>
---
> netRn4 | Lastz (previously known as blastz) was developed at
> netRn4 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netRn4 | TARGET=_blank>Pennsylvania State University</A> by 
> netRn4 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netRn4 | Ross Hardison.</P>

13026c13075
< netRn4 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netRn4 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

13217,13220c13266,13270
< netTetNig1 | LASTZ was developed at
< netTetNig1 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netTetNig1 | Bob Harris.
< netTetNig1 | </P>
---
> netTetNig1 | Lastz (previously known as blastz) was developed at
> netTetNig1 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netTetNig1 | TARGET=_blank>Pennsylvania State University</A> by 
> netTetNig1 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netTetNig1 | Ross Hardison.</P>

13223c13273
< netTetNig1 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netTetNig1 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

13414,13417c13464,13468
< netXenTro2 | LASTZ was developed at
< netXenTro2 | <A HREF="http://www.bx.psu.edu/~rsharris/lastz/" TARGET=_blank>Miller Lab at Pennsylvania State University</A> by 
< netXenTro2 | Bob Harris.
< netXenTro2 | </P>
---
> netXenTro2 | Lastz (previously known as blastz) was developed at
> netXenTro2 | <A HREF="http://www.bx.psu.edu/miller_lab/" 
> netXenTro2 | TARGET=_blank>Pennsylvania State University</A> by 
> netXenTro2 | Minmei Hou, Scott Schwartz, Zheng Zhang, and Webb Miller with advice from
> netXenTro2 | Ross Hardison.</P>

13420c13471
< netXenTro2 | <A HREF="https://www.repeatmasker.org/" TARGET=_blank>RepeatMasker</A>
---
> netXenTro2 | <A HREF="http://www.repeatmasker.org" TARGET=_blank>RepeatMasker</A>

13911c13962
< rmsk | <a href="https://www.repeatmasker.org/" target="_blank">RepeatMasker</a>
---
> rmsk | <a href="http://www.repeatmasker.org/" target="_blank">RepeatMasker</a>

13930,13942d13980
< rmsk | <p>
< rmsk | When analyzing the data tables of this track, keep in mind that Repbase is not the same 
< rmsk | as the Repeatmasker sequence database and that the repeat names in the
< rmsk | Repeatmasker output are not the same as the sequence names in the Repeatmasker
< rmsk | database.  Concretely, you can find a name such as "L1PA4" in the Repeatmasker
< rmsk | output and this track, but there is not necessarily a single sequence "L1PA4"
< rmsk | in the Repeatmasker database. This is because Repeatmasker creates annotations
< rmsk | by joining matches to partial pieces of the database together so there is no
< rmsk | 1:1 relationship between its sequence database and the annotations. To learn
< rmsk | more, you can read the Repeatmasker paper, its source code or reach out to the
< rmsk | Repeatmasker authors, your local expert on transposable elements or us.
< rmsk | </p>
< rmsk | 

13992,13993c14030,14031
< rmsk | <a href="https://www.repeatmasker.org/" target="_blank">
< rmsk | https://www.repeatmasker.org/</a>. 1996-2010.
---
> rmsk | <a href="http://www.repeatmasker.org" target="_blank">
> rmsk | http://www.repeatmasker.org</a>. 1996-2010.

14059c14097
< sibGene | <A HREF="https://estscan.sourceforge.net/" TARGET="_BLANK">ESTScan</A>.</P>
---
> sibGene | <A HREF="http://estscan.sourceforge.net" TARGET="_BLANK">ESTScan</A>.</P>

14085c14123
< sibGene | <A HREF="https://sibsim4.sourceforge.net/" TARGET="_BLANK">SIBsim4</A>, keeping 
---
> sibGene | <A HREF="http://sibsim4.sourceforge.net" TARGET="_BLANK">SIBsim4</A>, keeping 

14144c14182
< sibTxGraph | <A HREF="https://sibsim4.sourceforge.net/" TARGET="_BLANK">SIBsim4</A>, keeping 
---
> sibTxGraph | <A HREF="http://sibsim4.sourceforge.net" TARGET="_BLANK">SIBsim4</A>, keeping 

14455c14493
< stsMapMouseNew | TARGET=_blank>WICGR Mouse Genetic Map</A>, <A href="https://www.informatics.jax.org//"
---
> stsMapMouseNew | TARGET=_blank>WICGR Mouse Genetic Map</A>, <A href="http://www.informatics.jax.org/"

14463c14501
< stsMapMouseNew | <LI><A href="https://www.informatics.jax.org/" TARGET=_blank> Mouse Genome Informatics (MGI)</A>
---
> stsMapMouseNew | <LI><A href="http://www.informatics.jax.org" TARGET=_blank> Mouse Genome Informatics (MGI)</A>