---------------------------------------------------------------


mm39.trackDb.html : Differences exist between hgwbeta and hgw2 

(RR fields taken from public MySql server, not individual machine)

6174,6179c6174,6180
< vistaEnhancersBb | <p>Items appearing in <b><font color="#2260f2">blue</font></b> (positive) indicate that a
< vistaEnhancersBb | reproducible pattern was observed in the in vivo enhancer assay under at least one of the
< vistaEnhancersBb | tested conditions. Items appearing in <b><font color="#646464">gray</font></b> (negative) indicate
< vistaEnhancersBb | that NO reproducible pattern was observed in the in vivo enhancer assay under any of the tested
< vistaEnhancersBb | conditions. This does not exclude the possibility that this region is a reproducible enhancer active
< vistaEnhancersBb | under different conditions, for example at an earlier or later timepoint in development.</p>
---
> vistaEnhancersBb | <p> Items appearing in <b><font color="red">red</font></b> (positive) indicate that a reproducible
> vistaEnhancersBb | pattern was observed in the in vivo enhancer assay. Items appearing in
> vistaEnhancersBb | <b><font color="blue">blue</font></b> (negative) indicate that NO reproducible pattern was observed
> vistaEnhancersBb | in the  in vivo enhancer assay.  Note that this annotation refers only to the single developmental
> vistaEnhancersBb | timepoint that was tested in this screen (e11.5) and does not exclude the possibility that this
> vistaEnhancersBb | region is a reproducible enhancer active at earlier or later timepoints in development.
> vistaEnhancersBb | </p>

6182c6183
< vistaEnhancersBb | <p> Excerpted from the Vista Enhancer <a HREF="https://enhancer.lbl.gov/vista/manual"
---
> vistaEnhancersBb | <p> Excerpted from the Vista Enhancer <a HREF="https://enhancer.lbl.gov/aboutproject_n.html"

6214c6215
< vistaEnhancersBb | transgenic assays: <a HREF="https://enhancer.lbl.gov/vista/manual"
---
> vistaEnhancersBb | transgenic assays: <a HREF="https://enhancer.lbl.gov/aboutproject_n.html"

6218,6220c6219,6222
< vistaEnhancersBb | <a href="https://gitlab.com/egsb-mfgl/vista-data/" target="_blank">vista-data</a> bed files for
< vistaEnhancersBb | hg38 and mm10 into bigBed format using the bedToBigBed utility. The data for mm39 was lifted over
< vistaEnhancersBb | from mm10. The data for hg19 was lifted over from hg38.</p> 
---
> vistaEnhancersBb | <a href="https://enhancer.lbl.gov/cgi-bin/imagedb3.pl?show=1;page=1;search.form=no;page_size=20000;action=search;form=search;search.result=yes;search.sequence=1"
> vistaEnhancersBb | target="_blank">Experimental Data</a> for hg19 and mm9 into bigBed format using the bedToBigBed
> vistaEnhancersBb | utility. The data for hg38 was lifted over from hg19. The data for mm10 and mm39 were lifted over
> vistaEnhancersBb | from mm9.</p> 

6234c6236
< vistaEnhancersBb | <p>Thanks to the Lawrence Berkeley National Laboratory for providing this data.</p>
---
> vistaEnhancersBb | <p>Thanks to the Lawrence Berkeley National Laboratory for providing this data</p>

6238,6246d6239
< vistaEnhancersBb | <p>
< vistaEnhancersBb | Kosicki M, Baltoumas FA, Kelman G, Boverhof J, Ong Y, Cook LE, Dickel DE, Pavlopoulos GA, Pennacchio
< vistaEnhancersBb | LA, Visel A.
< vistaEnhancersBb | <a href="https://academic.oup.com/nar/article-lookup/doi/10.1093/nar/gkae940" target="_blank">
< vistaEnhancersBb | VISTA Enhancer browser: an updated database of tissue-specific developmental enhancers</a>.
< vistaEnhancersBb | <em>Nucleic Acids Res</em>. 2025 Jan 6;53(D1):D324-D330.
< vistaEnhancersBb | PMID: <a href="https://www.ncbi.nlm.nih.gov/pubmed/39470740" target="_blank">39470740</a>; PMC: <a
< vistaEnhancersBb | href="https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11701537/" target="_blank">PMC11701537</a>
< vistaEnhancersBb | </p>