--------------------------------------------------------------- mm10.trackDb.html : Differences exist between hgwbeta and hgw2 (RR fields taken from public MySql server, not individual machine) 1674,1675c1674 < clsLongReadRnaTrack | employed the Capture Long-read Sequencing (CLS) protocol to enrich transcripts from targeted genomic regions. It used a large capture array with orthologous probes in human and mouse genomes, targeting non-GENCODE lncRNA annotations and regions suspected of unannotated transcription. CapTrap-Seq, a cDNA library preparation protocol, was used to enrich for full-length RNA molecules (5′ to 3′). < clsLongReadRnaTrack |

--- > clsLongReadRnaTrack | employed the Capture Long-read Sequencing (CLS) protocol to enrich transcripts from targeted genomic regions. It used a large capture array with orthologous probes in human and mouse genomes, targeting non-GENCODE lncRNA annotations and regions suspected of unannotated transcription. CapTrap-Seq, a cDNA library preparation protocol, was used to enrich for full-length RNA molecules (5′ to 3′).

1677,1687c1676 < clsLongReadRnaTrack |

< clsLongReadRnaTrack | Matched adult and embryonic tissues from human and mouse were selected to maximize transcriptome complexity. Libraries were sequenced pre- and post-capture using PacBio and Oxford Nanopore Technologies (ONT) long-read platforms, as well as short-read technologies. < clsLongReadRnaTrack |

< clsLongReadRnaTrack | < clsLongReadRnaTrack |

< clsLongReadRnaTrack | Transcript isoform models were built from reads using the LyRic analysis software. These were merged using intron chains, with transcription start and end sites anchored using CAGE and poly(A) data. < clsLongReadRnaTrack |

< clsLongReadRnaTrack | < clsLongReadRnaTrack |

< clsLongReadRnaTrack | Data and metadata is discoverable via Array Express entry E-MTAB-14562 < clsLongReadRnaTrack |

--- > clsLongReadRnaTrack | Matched adult and embryonic tissues from human and mouse were selected to maximize transcriptome complexity. Libraries were sequenced pre- and post-capture using PacBio and Oxford Nanopore Technologies (ONT) long-read platforms, as well as short-read technologies.

1688a1678 > clsLongReadRnaTrack | Transcript isoform models were built from reads using the LyRic analysis software. These were merged using intron chains, with transcription start and end sites anchored using CAGE and poly(A) data.

9730,9731c9720,9721 < evaSnp6 | < evaSnp6 | EVA Release 8 MakeDoc.

--- > evaSnp6 | > evaSnp6 | EVA Release 7 MakeDoc.

9750c9740 < evaSnp6 | of interest, e.g. evaSnp8.bb. --- > evaSnp6 | of interest, e.g. evaSnp7.bb. 9757c9747 < evaSnp6 | bigBedToBed https://hgdownload.soe.ucsc.edu/gbdb/mm10/bbi/evaSnp8.bb -chrom=chr21 -start=0 -end=100000000 stdout --- > evaSnp6 | bigBedToBed https://hgdownload.soe.ucsc.edu/gbdb/mm10/bbi/evaSnp7.bb -chrom=chr21 -start=0 -end=100000000 stdout 9947,9948c9937,9938 < evaSnp7 | < evaSnp7 | EVA Release 8 MakeDoc.

--- > evaSnp7 | > evaSnp7 | EVA Release 7 MakeDoc.

9967c9957 < evaSnp7 | of interest, e.g. evaSnp8.bb. --- > evaSnp7 | of interest, e.g. evaSnp7.bb. 9974c9964 < evaSnp7 | bigBedToBed https://hgdownload.soe.ucsc.edu/gbdb/mm10/bbi/evaSnp8.bb -chrom=chr21 -start=0 -end=100000000 stdout --- > evaSnp7 | bigBedToBed https://hgdownload.soe.ucsc.edu/gbdb/mm10/bbi/evaSnp7.bb -chrom=chr21 -start=0 -end=100000000 stdout 10164,10165c10154,10155 < evaSnpContainer | < evaSnpContainer | EVA Release 8 MakeDoc.

--- > evaSnpContainer | > evaSnpContainer | EVA Release 7 MakeDoc.

10184c10174 < evaSnpContainer | of interest, e.g. evaSnp8.bb. --- > evaSnpContainer | of interest, e.g. evaSnp7.bb. 10191c10181 < evaSnpContainer | bigBedToBed https://hgdownload.soe.ucsc.edu/gbdb/mm10/bbi/evaSnp8.bb -chrom=chr21 -start=0 -end=100000000 stdout --- > evaSnpContainer | bigBedToBed https://hgdownload.soe.ucsc.edu/gbdb/mm10/bbi/evaSnp7.bb -chrom=chr21 -start=0 -end=100000000 stdout