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hg18.trackDb.html : Differences exist between hgwbeta and hgw2 

(RR fields taken from public MySql server, not individual machine)

1296,1306c1296,1297
< bamSLDenisova | This track shows Denisova sequence reads mapped to the
< bamSLDenisova | human genome, but to the old hg18 assembly from 2006. We provide updated annotation
< bamSLDenisova | tracks with the called variants on more recent assemblies: 
< bamSLDenisova | <a href="hgTrackUi?g=dhcVcfDenisovaPinky&hgTracksConfigPage=configure">Denisova variants on hg19</a>, 
< bamSLDenisova | and <a href="hgTrackUi?g=ancient&hgTracksConfigPage=configure">Neanderthal and Denisova variants on hg38</a>.
< bamSLDenisova | There is no actual "Neanderthal" or "Denisova" genome assembly, the short fragments obtained from ancient
< bamSLDenisova | samples can be aligned to the human genome and analyses are based on short variants.
< bamSLDenisova | </P>
< bamSLDenisova | 
< bamSLDenisova | <P>
< bamSLDenisova | The Denisova sequence was generated from a phalanx bone
---
> bamSLDenisova | The Denisova track shows Denisova sequence reads mapped to the
> bamSLDenisova | human genome. The Denisova sequence was generated from a phalanx bone

12816c12807
< cnp | The authors utilized numerous quality measures, including repeated experiments
---
> cnp | The authors utilized numerous quality meaures, including repeated experiments

12942c12933
< cnpRedon | The authors utilized numerous quality measures, including
---
> cnpRedon | The authors utilized numerous quality meaures, including

13209,13210d13199
< cons44way | The names of selected species are colored according to their clade,
< cons44way | alternating between blue and green.

13728c13717
< cpgIslandExt | <a href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/utils/cpgIslandExt/" target=_blank>src/utils/cpgIslandExt/</a>.
---
> cpgIslandExt | <a href="https://genome-source.gi.ucsc.edu/gitlist/kent.git/tree/master/src/utils/cpgIslandExt/" target=_blank>src/utils/cpgIslandExt/</a>.

13833c13822
< cpgIslandExtUnmasked | <a href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/utils/cpgIslandExt/" target=_blank>src/utils/cpgIslandExt/</a>.
---
> cpgIslandExtUnmasked | <a href="https://genome-source.gi.ucsc.edu/gitlist/kent.git/tree/master/src/utils/cpgIslandExt/" target=_blank>src/utils/cpgIslandExt/</a>.

13938c13927
< cpgIslandSuper | <a href="https://github.com/ucscGenomeBrowser/kent/tree/master/src/utils/cpgIslandExt/" target=_blank>src/utils/cpgIslandExt/</a>.
---
> cpgIslandSuper | <a href="https://genome-source.gi.ucsc.edu/gitlist/kent.git/tree/master/src/utils/cpgIslandExt/" target=_blank>src/utils/cpgIslandExt/</a>.

17221c17210
< encodeEgaspUpdate | of the defining sites plus the log-likelihood ratio of a Markov model for 
---
> encodeEgaspUpdate | of the defining sites plus the the log-likelihood ratio of a Markov model for 

17282c17271
< encodeEgaspUpdate | Bioinformatics</A> of the University of G&ouml;ttingen in Germany.</P>
---
> encodeEgaspUpdate | Bioinformatics</A> of the University of Göttingen in Germany.</P>

17286,17287c17275,17276
< encodeEgaspUpdate | Normale Sup&eacute;rieure</A> (Paris, France) and Franck Delaplace
< encodeEgaspUpdate | from the Laboratoire de M&eacute;thodes Informatiques 
---
> encodeEgaspUpdate | Normale Supérieure</A> (Paris, France) and Franck Delaplace
> encodeEgaspUpdate | from the Laboratoire de Méthodes Informatiques 

17295c17284
< encodeEgaspUpdate | Grup de Recerca en Inform&agrave;tica Biom&eacute;dica 
---
> encodeEgaspUpdate | Grup de Recerca en Informàtica Biomèdica 

17297c17286
< encodeEgaspUpdate | the Institut Municipal d'Investigaci&oacute; M&egrave;dica (IMIM) in Barcelona.
---
> encodeEgaspUpdate | the Institut Municipal d'Investigació Mèdica (IMIM) in Barcelona.

17299c17288
< encodeEgaspUpdate | Enrique Blanco and Roderic Guig&oacute;.
---
> encodeEgaspUpdate | Enrique Blanco and Roderic Guigó.

17349c17338
< encodeEgaspUpdate | Blanco, E., Parra, G.  and Guig&oacute;, R. 
---
> encodeEgaspUpdate | Blanco, E., Parra, G.  and Guigó, R. 

17354c17343
< encodeEgaspUpdate | Guig&oacute;, R. 
---
> encodeEgaspUpdate | Guigó, R. 

17360c17349
< encodeEgaspUpdate | Guig&oacute;, R., Knudsen, S., Drake, N. and Smith, T.
---
> encodeEgaspUpdate | Guigó, R., Knudsen, S., Drake, N. and Smith, T.

17365c17354
< encodeEgaspUpdate | Parra, G., Blanco, E. and Guig&oacute;, R. 
---
> encodeEgaspUpdate | Parra, G., Blanco, E. and Guigó, R. 

17386c17375
< encodeEgaspUpdate | Guig&oacute;, R., Dermitzakis, E.T., Agarwal, P., Ponting, C.P., Parra, G., 
---
> encodeEgaspUpdate | Guigó, R., Dermitzakis, E.T., Agarwal, P., Ponting, C.P., Parra, G., 

17393c17382
< encodeEgaspUpdate | Parra, G., Agarwal, P., Abril, J.F., Wiehe, T., Fickett, J.W. and Guig&oacute;, R. 
---
> encodeEgaspUpdate | Parra, G., Agarwal, P., Abril, J.F., Wiehe, T., Fickett, J.W. and Guigó, R. 

21026c21015
< encodeUncFaire | log-ratio value, as recommended by NimbleGen.  Results in yeast were 
---
> encodeUncFaire | log-ratio value, as recomended by NimbleGen.  Results in yeast were 

24144c24133
< encodeYaleMASPlacRNATars | These data were generated and analyzed by the labs of Michael Snyder, 
---
> encodeYaleMASPlacRNATars | These data were generated and analyzed by the the labs of Michael Snyder, 

24307c24296
< encodeYaleRnaSuper | These data were generated and analyzed by the labs of Michael Snyder,
---
> encodeYaleRnaSuper | These data were generated and analyzed by the the labs of Michael Snyder,

25373c25362
< geneid | scores of the defining sites, plus the log-likelihood ratio of a
---
> geneid | scores of the defining sites, plus the the log-likelihood ratio of a

28555,28556d28543
< multiz28way | The names of selected species are colored according to their clade,
< multiz28way | alternating between blue and green.

35189c35176
< numtS | NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.
---
> numtS | NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.

35280c35267
< numtSAssembled | NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.
---
> numtSAssembled | NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.

35371c35358
< numtSeq | NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.
---
> numtSeq | NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.

35462c35449
< numtSMitochondrion | NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.
---
> numtSMitochondrion | NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.

35553c35540
< numtSMitochondrionChrPlacement | NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.
---
> numtSMitochondrionChrPlacement | NumtS mappings were obtained by running Blast2seq (program: BlastN) between each chromosome of of the Human Genome hg18 build and the human mitochondrial reference sequence (rCRS, AC: NC_012920), fixing the e-value threshold to 1e-03. The assembling of the HSPs was performed with spreadsheet interpolation and manual inspection.

37441c37428
< refSeqComposite | for an individual subtrack, click the wrench icon next to the track name in the subtrack list.</p>
---
> refSeqComposite | for an individual subtrack, click the wrench icon next to the track name in the subtrack list .</p>

40298c40285
< ucsfBrainMethyl | include those that map to MRE sites in the reference. MRE reads occurred frequently in 
---
> ucsfBrainMethyl | include those that map to MRE sites in the reference. MRE reads occured frequently in