mikep: changes by file

review to branch (2009-02-17 to 2009-02-24) v201

• src/hg/encode/DAFs/GisRnaSeq.daf
  • 1.3 lines changed: 1, context: html, text, full: html, text
    transfrags not avaialble for feb freeze
  • 1.2 lines changed: 6, context: html, text, full: html, text
    SOLiD colorspace fasta format, not fastq
  • 1.1 lines changed: 43, context: html, text, full: html, text
    New datatype for Gingeras GIS project
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.157 lines changed: 6, context: html, text, full: html, text
    added comment about quality scores
• src/hg/hgTracks/simpleTracks.c
  • 1.62 lines changed: 1, context: html, text, full: html, text
    inadvertently commited timing on
  • 1.61 lines changed: 2, context: html, text, full: html, text
    Hopefully this is a better error message - I ran into this a few times with new encode track types
• src/hg/inc/versionInfo.h
  • 1.141 lines changed: 1, context: html, text, full: html, text
    "New version number v201"
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.163 lines changed: 122, context: html, text, full: html, text
    re-doing Riken Cage
  • 1.160 lines changed: 6, context: html, text, full: html, text
    added wiggle ranges after load
  • 1.159 lines changed: 275, context: html, text, full: html, text
    new tracks from RIKEN
  • 1.158 lines changed: 8, context: html, text, full: html, text
    pairedTagAlign not implemented yet
  • 1.157 lines changed: 60, context: html, text, full: html, text
    new data for GIS PET GM12878
  • 1.156 lines changed: 61, context: html, text, full: html, text
    new data for GIS PET GM12878
• src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.html
  • 1.1 lines changed: 93, context: html, text, full: html, text
    first version of caltech doco
• src/utils/qa/weeklybld/buildCvsReports.csh
  • 1.16 lines changed: 3, context: html, text, full: html, text
    need to create sub-dirs as well
  • 1.15 lines changed: 25, context: html, text, full: html, text
    new system to remember the history of review reports
• src/utils/qa/weeklybld/buildEnv.csh
  • 1.48 lines changed: 3, context: html, text, full: html, text
    v201 final build
• src/utils/qa/weeklybld/cvs-reports-delta
  • 1.8 lines changed: 1, context: html, text, full: html, text
    new system to remember the history of review reports