mikep: changes by commit

review to branch (2009-02-17 to 2009-02-24) v201

• new data for GIS PET GM12878
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.157 - lines changed: 60, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.156 - lines changed: 61, context: html, text, full: html, text
• Hopefully this is a better error message - I ran into this a few times with new encode track types
  • src/hg/hgTracks/simpleTracks.c 1.61 - lines changed: 2, context: html, text, full: html, text
• pairedTagAlign not implemented yet
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.158 - lines changed: 8, context: html, text, full: html, text
• new system to remember the history of review reports
  • src/utils/qa/weeklybld/buildCvsReports.csh 1.15 - lines changed: 25, context: html, text, full: html, text
  • src/utils/qa/weeklybld/cvs-reports-delta 1.8 - lines changed: 1, context: html, text, full: html, text
• need to create sub-dirs as well
  • src/utils/qa/weeklybld/buildCvsReports.csh 1.16 - lines changed: 3, context: html, text, full: html, text
• New datatype for Gingeras GIS project
  • src/hg/encode/DAFs/GisRnaSeq.daf 1.1 - lines changed: 43, context: html, text, full: html, text
• SOLiD colorspace fasta format, not fastq
  • src/hg/encode/DAFs/GisRnaSeq.daf 1.2 - lines changed: 6, context: html, text, full: html, text
• new tracks from RIKEN
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.159 - lines changed: 275, context: html, text, full: html, text
• inadvertently commited timing on
  • src/hg/hgTracks/simpleTracks.c 1.62 - lines changed: 1, context: html, text, full: html, text
• added wiggle ranges after load
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.160 - lines changed: 6, context: html, text, full: html, text
• first version of caltech doco
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeCaltechRnaSeq.html 1.1 - lines changed: 93, context: html, text, full: html, text
• re-doing Riken Cage
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.163 - lines changed: 122, context: html, text, full: html, text
• added comment about quality scores
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.157 - lines changed: 6, context: html, text, full: html, text
• transfrags not avaialble for feb freeze
  • src/hg/encode/DAFs/GisRnaSeq.daf 1.3 - lines changed: 1, context: html, text, full: html, text
• v201 final build
  • src/utils/qa/weeklybld/buildEnv.csh 1.48 - lines changed: 3, context: html, text, full: html, text
• "New version number v201"
  • src/hg/inc/versionInfo.h 1.141 - lines changed: 1, context: html, text, full: html, text