aamp: changes by file

branch to review (2009-02-09 to 2009-02-17) v200

• src/hg/hgTracks/encode.c
  • 1.16 lines changed: 1, context: html, text, full: html, text
    Error fixed for trackDbSetting thinking trackDb is NULL in the peaks tracks.
• src/hg/makeDb/doc/hgFixed.txt
  • 1.16 lines changed: 12, context: html, text, full: html, text
    REBASE update.
• src/hg/makeDb/hgCutters/hgCutters.c
  • 1.2 lines changed: 1, context: html, text, full: html, text
    Compile-error fix. Library code changed years ago and this one didn't get updated then for some reason.
• src/hg/makeDb/trackDb/human/affyHuEx1.html
  • 1.14 lines changed: 110, context: html, text, full: html, text
    Putting back in an old one.
  • 1.13 lines changed: 110, context: html, text, full: html, text
    Top-level affy all-exon supertrack. Removed HTML and entries in human/mouse/rat subdirs.
  • 1.2 lines changed: 3, context: html, text, full: html, text
    Changes to affy human exon tracks. Put probe track right below microarray track and mention both in each others' details.
• src/hg/makeDb/trackDb/human/trackDb.ra
  • 1.435 lines changed: 11, context: html, text, full: html, text
    Putting back in an old one.
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.369 lines changed: 12, context: html, text, full: html, text
    Removed affyHuEx1
• src/hg/near/hgNear/hgNearData/orderDb.ra
  • 1.29 lines changed: 6, context: html, text, full: html, text
    Put missing ordering back in.
• src/hg/near/hgNear/hgNearData/Human/columnDb.ra
  • 1.35 lines changed: 18, context: html, text, full: html, text
    Put missing columns back in.