aamp: changes by commit

branch to review (2009-02-09 to 2009-02-17) v200

• Changes to affy human exon tracks. Put probe track right below microarray track and mention both in each others' details.
  • src/hg/makeDb/trackDb/human/affyHuEx1.html 1.2 - lines changed: 3, context: html, text, full: html, text
• Top-level affy all-exon supertrack. Removed HTML and entries in human/mouse/rat subdirs.
  • src/hg/makeDb/trackDb/human/affyHuEx1.html 1.13 - lines changed: 110, context: html, text, full: html, text
• Removed affyHuEx1
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.369 - lines changed: 12, context: html, text, full: html, text
• REBASE update.
  • src/hg/makeDb/doc/hgFixed.txt 1.16 - lines changed: 12, context: html, text, full: html, text
• Compile-error fix. Library code changed years ago and this one didn't get updated then for some reason.
  • src/hg/makeDb/hgCutters/hgCutters.c 1.2 - lines changed: 1, context: html, text, full: html, text
• Error fixed for trackDbSetting thinking trackDb is NULL in the peaks tracks.
  • src/hg/hgTracks/encode.c 1.16 - lines changed: 1, context: html, text, full: html, text
• Putting back in an old one.
  • src/hg/makeDb/trackDb/human/affyHuEx1.html 1.14 - lines changed: 110, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.435 - lines changed: 11, context: html, text, full: html, text
• Put missing columns back in.
  • src/hg/near/hgNear/hgNearData/Human/columnDb.ra 1.35 - lines changed: 18, context: html, text, full: html, text
• Put missing ordering back in.
  • src/hg/near/hgNear/hgNearData/orderDb.ra 1.29 - lines changed: 6, context: html, text, full: html, text