kent: changes by commit

branch to review (2009-02-09 to 2009-02-17) v200

• Adding -test flag
  • src/utils/udcCleanup/udcCleanup.c 1.2 - lines changed: 17, context: html, text, full: html, text
• Making this handle clicks from bigWig custom tracks.
  • src/hg/hgc/hgc.c 1.1504 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgc/hgc.h 1.44 - lines changed: 3, context: html, text, full: html, text
  • src/hg/hgc/wiggleClick.c 1.31 - lines changed: 25, context: html, text, full: html, text
• Shortened 'clipDontDie' option to just 'clip'
  • src/utils/wigToBigWig/wigToBigWig.c 1.6 - lines changed: 3, context: html, text, full: html, text
• Makin blat work with U's instead of T's if q=rna is set.
  • src/blat/blat.c 1.113 - lines changed: 2, context: html, text, full: html, text
  • src/blat/version.doc 1.73 - lines changed: 1, context: html, text, full: html, text
  • src/inc/genoFind.h 1.80 - lines changed: 1, context: html, text, full: html, text
• Bumping bigBedSig due to slight change in format.
  • src/inc/sig.h 1.13 - lines changed: 1, context: html, text, full: html, text
• Removing unused code.
  • src/lib/bwgQuery.c 1.18 - lines changed: 106, context: html, text, full: html, text
• Testing some fool thing.
  • src/oneShot/test/test.c 1.34 - lines changed: 18, context: html, text, full: html, text
• Adding fieldCount and definedFieldCount to bbiFile header for bigBeds.
  • src/inc/bbiFile.h 1.6 - lines changed: 5, context: html, text, full: html, text
  • src/inc/bigBed.h 1.8 - lines changed: 2, context: html, text, full: html, text
  • src/lib/bbiRead.c 1.8 - lines changed: 25, context: html, text, full: html, text
  • src/lib/bigBed.c 1.10 - lines changed: 14, context: html, text, full: html, text
  • src/utils/bedToBigBed/bedToBigBed.c 1.2 - lines changed: 6, context: html, text, full: html, text
• Creating bigBed type custom tracks.
  • src/hg/hgTracks/bedTrack.c 1.2 - lines changed: 17, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c 1.1553 - lines changed: 19, context: html, text, full: html, text
  • src/hg/hgc/bigBedClick.c 1.2 - lines changed: 36, context: html, text, full: html, text
  • src/hg/hgc/hgc.c 1.1505 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgc/hgc.h 1.45 - lines changed: 3, context: html, text, full: html, text
  • src/hg/lib/customFactory.c 1.96 - lines changed: 34, context: html, text, full: html, text
• Updating worm link
  • src/hg/makeDb/doc/ucscGenes/hg18.ucscGenes11.csh 1.17 - lines changed: 13, context: html, text, full: html, text
• Allowing remote databases.
  • src/hg/makeDb/schema/dbSnoop/dbSnoop.c 1.13 - lines changed: 17, context: html, text, full: html, text
• Freen makes a 2 column file for testing.
  • src/hg/oneShot/freen/freen.c 1.85 - lines changed: 10, context: html, text, full: html, text
  • src/hg/oneShot/freen/test 1.4 - lines changed: 100000, context: html, text, full: html, text
• Removing stray (big!) test file that somehow got committed.
  • src/hg/oneShot/freen/test 1.5 - lines changed: 100000, context: html, text, full: html, text
• Wrapping a read in netReadAll instead because it's so big it sometimes seems to come back in parts.
  • src/jkOwnLib/splix.c 1.6 - lines changed: 2, context: html, text, full: html, text
• Adding hgBbiDbLink.
  • src/hg/makeDb/makefile 1.40 - lines changed: 1, context: html, text, full: html, text
• Adding a comment.
  • src/hg/near/hgNear/hgNear.c 1.184 - lines changed: 2, context: html, text, full: html, text
• Adding crTree utilities.
  • src/hg/utils/makefile 1.12 - lines changed: 2, context: html, text, full: html, text
• Cgi-encoding file names in cache dir.
  • src/lib/udc.c 1.8 - lines changed: 23, context: html, text, full: html, text
• Testing simultanious writes.
  • src/hg/oneShot/freen/freen.c 1.86 - lines changed: 27, context: html, text, full: html, text
• Removed flocks which seem to be unneeded. Adding qEncoding to make directory names easier to pursue under Unix.
  • src/lib/udc.c 1.12 - lines changed: 56, context: html, text, full: html, text
• Improving comment.
  • src/hg/hgTracks/bedTrack.c 1.3 - lines changed: 1, context: html, text, full: html, text