galt: changes by commit

review to branch (2009-03-03 to 2009-03-10) v202

• runforever for production instance
  • src/hg/encode/hgEncodeSubmit/runforever.sample 1.1 - lines changed: 19, context: html, text, full: html, text
• tweak
  • src/hg/encode/hgEncodeSubmit/runforever.sample 1.2 - lines changed: 3, context: html, text, full: html, text
• ENCODE is really making huge lists
  • src/hg/qaPushQ/qaPushQ.c 1.113 - lines changed: 1, context: html, text, full: html, text
• adding https support
  • src/inc/https.h 1.1 - lines changed: 4, context: html, text, full: html, text
  • src/lib/https.c 1.1 - lines changed: 183, context: html, text, full: html, text
  • src/lib/makefile 1.149 - lines changed: 1, context: html, text, full: html, text
  • src/lib/net.c 1.70 - lines changed: 17, context: html, text, full: html, text
  • src/lib/udc.c 1.14 - lines changed: 2, context: html, text, full: html, text
• Modifications to make system to support optional external libraries, motivated by need for SSL
  • src/ai/growNet/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/ai/letterChain/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/ai/pairCompress/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/ai/wordChain/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/blat/makefile 1.34 - lines changed: 1, context: html, text, full: html, text
  • src/blatTheory/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/blatz/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/cdnaAli/cluster/makefile 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/dnaDust/makefile 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/gfClient/makefile 1.18 - lines changed: 1, context: html, text, full: html, text
  • src/gfServer/makefile 1.25 - lines changed: 1, context: html, text, full: html, text
  • src/hg/affyGnf/makefile 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/hg/affyTransciptome/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/agpAllToFaFile/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/agpCloneCheck/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/agpCloneList/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/agpToFa/makefile 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/agpToGl/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/agpTweak/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/altGraph/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/altSplice/affySplice/makefile 1.12 - lines changed: 1, context: html, text, full: html, text
  • src/hg/altSplice/agxToXml/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/altSplice/altSplice/makefile 1.19 - lines changed: 2, context: html, text, full: html, text
  • src/hg/altSplice/axtCountBeds/makefile 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/altSplice/exonWalk/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/altSplice/filterEdges/makefile 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/altSplice/lib/makefile 1.16 - lines changed: 1, context: html, text, full: html, text
  • src/hg/altSplice/spliceWalk/makefile 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/archaeStuff/utils/gbArchaeGenome/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/autoDtd/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/autoSql/makefile 1.15 - lines changed: 1, context: html, text, full: html, text
  • src/hg/autoSql/tests/makefile 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/autoXml/t/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/baseMask/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/bedIntersect/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/bedItemOverlapCount/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/bedOrBlocks/makefile 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/bedOverlap/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/bedSort/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/bedSplitOnChrom/makefile 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/bedThickOnly/makefile 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/bedToGenePred/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/bioImage/bioImageLoad/makefile 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/bioImage/hgBioImage/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/bioImage/knownToBioImage/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/bioImage/loadMahoney/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/blastToPsl/makefile 1.22 - lines changed: 1, context: html, text, full: html, text
  • src/hg/borfBig/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/cartDump/makefile 1.15 - lines changed: 1, context: html, text, full: html, text
  • src/hg/cartReset/makefile 1.16 - lines changed: 1, context: html, text, full: html, text
  • src/hg/ccTrack/bedToBinDex/makefile 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/cgiExample/makefile 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/hg/checkHgFindSpec/makefile 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/checkTableCoords/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/chimpStuff/chimpChromContigAgp/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/chimpStuff/chimpHiQualDiffs/makefile 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/hg/chimpStuff/chimpSuperQuals/makefile 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/ctgFaToFa/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/ctgToChromFa/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/das/makefile 1.15 - lines changed: 1, context: html, text, full: html, text
  • src/hg/dbTrash/makefile 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/dnaGene/makefile 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/hg/embossToPsl/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/hgEncodeDataVersions/makefile 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/hgEncodeScheduler/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/hgEncodeVocab/makefile 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/ldGencodeIntron/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/regionAgp/makefile 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/encode/regionOrtho/makefile 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/hg/estOrient/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/extractPslForLfs/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/fakeFinContigs/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/featureBits/makefile 1.13 - lines changed: 1, context: html, text, full: html, text
  • src/hg/ffaToFa/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/fishClones/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/fqToQa/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/fqToQac/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/fragPart/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gbGetEntries/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gbOneAcc/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gbToFaRa/makefile 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/assessLibs/makefile 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/averagExp/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/axtForEst/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/bedCons/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/bedThickToCds/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/checkableBorf/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/clusterGenes/makefile 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/clusterPsl/makefile 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/clusterRna/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/dnaMotifFind/makefile 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/eisenInput/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/emblMatrixToMotif/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/estLibStats/makefile 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/expToRna/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/iriToControlTable/makefile 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/iriToDnaMotif/makefile 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/lib/makefile 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/liftPromoHits/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/motifLogo/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/motifSig/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/orf/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/orfCompare/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/orfEnum/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/orfStats/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/polyInfo/makefile 1.12 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/promoSeqFromCluster/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/raToCds/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/twinOrf/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/twinOrf2/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/twinOrf3/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/twinOrfStats/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/twinOrfStats2/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneBounds/twinOrfStats3/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/geneOverlap/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/genePredCheck/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/genePredHisto/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/genePredSingleCover/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/genePredToFakePsl/makefile 1.3 - lines changed: 1, context: html, text, full: html, text
  • src/hg/genePredToGtf/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/genePredToMafFrames/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/genePredToMrna/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/genoPheno/gpFakeData/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/genoPheno/gpShuffleData/makefile 1.4 - lines changed: 1, context: html, text, full: html, text
  • src/hg/getFeatDna/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/getRna/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/getRnaPred/makefile 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/hg/getallpep/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gigAssembler/barger/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gigAssembler/checkAgpAndFa/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gigAssembler/checkDbSync/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gigAssembler/checkGoldDupes/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gigAssembler/checkN/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gigAssembler/checkNt/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gigAssembler/checkOut/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gigAssembler/checkPsl/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gigAssembler/checkQa/makefile 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gigAssembler/checkYbr/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
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  • src/hg/gigAssembler/codJobs/jabba/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/gigAssembler/conJobs/cdnaOnOoJobs/makefile 1.8 - lines changed: 1, context: html, text, full: html, text
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