tdreszer: changes by file

review to branch (2009-03-03 to 2009-03-10) v202

• src/hg/encode/encodeValidate/config/cv.ra
  • 1.83 lines changed: 4, context: html, text, full: html, text
    Added rediculous variable freezeDate, rather than rewrite pipeline
  • 1.79 lines changed: 1, context: html, text, full: html, text
    Clarified Large_Fragment description
• src/hg/encode/encodeValidate/config/labs.ra
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Tim is the Wrangler for Sanger's Encode Gencode
• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
  • 1.21 lines changed: 1, context: html, text, full: html, text
    Remove extra slash in link
  • 1.20 lines changed: 1, context: html, text, full: html, text
    Protocols are now pdfs not docs
• src/hg/hgTracks/bedTrack.c
  • 1.5 lines changed: 8, context: html, text, full: html, text
    There isn't actaully a cart var for these
  • 1.4 lines changed: 14, context: html, text, full: html, text
    Fixed gray level code to use ClosestToHome and cart values
• src/hg/hgTracks/cutterTrack.c
  • 1.14 lines changed: 4, context: html, text, full: html, text
    Cleaning up gray level code lead me to remove these unused calls
• src/hg/hgTracks/encode.c
  • 1.20 lines changed: 2, context: html, text, full: html, text
    There isn't actaully a cart var for these
  • 1.19 lines changed: 6, context: html, text, full: html, text
    Fixed gray level code to use ClosestToHome and cart values
• src/hg/hgTracks/hgTracks.c
  • 1.1558 lines changed: 20, context: html, text, full: html, text
    Fix for defaulting composite tracks. Requires Stdized view vis select name.
  • 1.1557 lines changed: 10, context: html, text, full: html, text
    Fixed gray level code to use ClosestToHome and cart values
• src/hg/hgTracks/rnaFoldTrack.c
  • 1.8 lines changed: 2, context: html, text, full: html, text
    There isn't actaully a cart var for these
  • 1.7 lines changed: 4, context: html, text, full: html, text
    Fixed gray level code to use ClosestToHome and cart values
• src/hg/hgTracks/simpleTracks.c
  • 1.67 lines changed: 15, context: html, text, full: html, text
    Change grayLevel even when cart variable has not been set.
  • 1.66 lines changed: 2, context: html, text, full: html, text
    Ouch! Accidental check in of experimental code.
  • 1.65 lines changed: 2, context: html, text, full: html, text
    Fixed gray level code to use ClosestToHome and cart values
  • 1.64 lines changed: 16, context: html, text, full: html, text
    Fixed gray level code to use ClosestToHome and cart values
• src/hg/js/hui.js
  • 1.21 lines changed: 78, context: html, text, full: html, text
    Stdize view vis select name. Support for disabling view cfgs on hide NOT TURNED ON. Converted more code to jQuery.
• src/hg/js/utils.js
  • 1.13 lines changed: 27, context: html, text, full: html, text
    Removed obsolete function
• src/hg/lib/hui.c
  • 1.167 lines changed: 8, context: html, text, full: html, text
    Shift view cfgs to unique positions. Stdize view vis select name.
  • 1.166 lines changed: 3, context: html, text, full: html, text
    Six of one...
  • 1.164 lines changed: 11, context: html, text, full: html, text
    Fixed HTML error and ifdef'd out useless code.
  • 1.163 lines changed: 38, context: html, text, full: html, text
    Fix filterByScore assumptions
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.196 lines changed: 125, context: html, text, full: html, text
    Changed Yale tracks from alpha to beta release
  • 1.195 lines changed: 20, context: html, text, full: html, text
    Updated ENCODE Gencode to the latest release. Also rearranged some deck chairs in Duke
  • 1.187 lines changed: 2, context: html, text, full: html, text
    Fixed a spanList problem in Duke's K562 Input track
  • 1.182 lines changed: 7, context: html, text, full: html, text
    Minor longLabel changes
  • 1.176 lines changed: 1, context: html, text, full: html, text
    Allow filtering by score on Yale. This is required for min gray shade.
• src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.html
  • 1.25 lines changed: 5, context: html, text, full: html, text
    Anti-spamasized the email