tdreszer: changes by commit

review to branch (2009-03-03 to 2009-03-10) v202

• Fix filterByScore assumptions
  • src/hg/lib/hui.c 1.163 - lines changed: 38, context: html, text, full: html, text
• Allow filtering by score on Yale. This is required for min gray shade.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.176 - lines changed: 1, context: html, text, full: html, text
• Clarified Large_Fragment description
  • src/hg/encode/encodeValidate/config/cv.ra 1.79 - lines changed: 1, context: html, text, full: html, text
• Cleaning up gray level code lead me to remove these unused calls
  • src/hg/hgTracks/cutterTrack.c 1.14 - lines changed: 4, context: html, text, full: html, text
• Fixed gray level code to use ClosestToHome and cart values
  • src/hg/hgTracks/bedTrack.c 1.4 - lines changed: 14, context: html, text, full: html, text
  • src/hg/hgTracks/encode.c 1.19 - lines changed: 6, context: html, text, full: html, text
  • src/hg/hgTracks/hgTracks.c 1.1557 - lines changed: 10, context: html, text, full: html, text
  • src/hg/hgTracks/rnaFoldTrack.c 1.7 - lines changed: 4, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c 1.65 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgTracks/simpleTracks.c 1.64 - lines changed: 16, context: html, text, full: html, text
• Ouch! Accidental check in of experimental code.
  • src/hg/hgTracks/simpleTracks.c 1.66 - lines changed: 2, context: html, text, full: html, text
• There isn't actaully a cart var for these
  • src/hg/hgTracks/bedTrack.c 1.5 - lines changed: 8, context: html, text, full: html, text
  • src/hg/hgTracks/encode.c 1.20 - lines changed: 2, context: html, text, full: html, text
  • src/hg/hgTracks/rnaFoldTrack.c 1.8 - lines changed: 2, context: html, text, full: html, text
• Change grayLevel even when cart variable has not been set.
  • src/hg/hgTracks/simpleTracks.c 1.67 - lines changed: 15, context: html, text, full: html, text
• Fixed HTML error and ifdef'd out useless code.
  • src/hg/lib/hui.c 1.164 - lines changed: 11, context: html, text, full: html, text
• Six of one...
  • src/hg/lib/hui.c 1.166 - lines changed: 3, context: html, text, full: html, text
• Minor longLabel changes
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.182 - lines changed: 7, context: html, text, full: html, text
• Fixed a spanList problem in Duke's K562 Input track
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.187 - lines changed: 2, context: html, text, full: html, text
• Anti-spamasized the email
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeYaleChIPseq.html 1.25 - lines changed: 5, context: html, text, full: html, text
• Tim is the Wrangler for Sanger's Encode Gencode
  • src/hg/encode/encodeValidate/config/labs.ra 1.4 - lines changed: 1, context: html, text, full: html, text
• Added rediculous variable freezeDate, rather than rewrite pipeline
  • src/hg/encode/encodeValidate/config/cv.ra 1.83 - lines changed: 4, context: html, text, full: html, text
• Updated ENCODE Gencode to the latest release. Also rearranged some deck chairs in Duke
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.195 - lines changed: 20, context: html, text, full: html, text
• Protocols are now pdfs not docs
  • src/hg/encode/hgEncodeVocab/hgEncodeVocab.c 1.20 - lines changed: 1, context: html, text, full: html, text
• Changed Yale tracks from alpha to beta release
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.196 - lines changed: 125, context: html, text, full: html, text
• Remove extra slash in link
  • src/hg/encode/hgEncodeVocab/hgEncodeVocab.c 1.21 - lines changed: 1, context: html, text, full: html, text
• Shift view cfgs to unique positions. Stdize view vis select name.
  • src/hg/lib/hui.c 1.167 - lines changed: 8, context: html, text, full: html, text
• Fix for defaulting composite tracks. Requires Stdized view vis select name.
  • src/hg/hgTracks/hgTracks.c 1.1558 - lines changed: 20, context: html, text, full: html, text
• Removed obsolete function
  • src/hg/js/utils.js 1.13 - lines changed: 27, context: html, text, full: html, text
• Stdize view vis select name. Support for disabling view cfgs on hide NOT TURNED ON. Converted more code to jQuery.
  • src/hg/js/hui.js 1.21 - lines changed: 78, context: html, text, full: html, text