pchan: changes by file

review to branch (2009-03-17 to 2009-03-31) v203

• src/hg/archaeStuff/data/Genome-info-meta
  • 1.2 lines changed: 6, context: html, text, full: html, text
    change joseph's coat org name and multiz config
  • 1.1 lines changed: 75, context: html, text, full: html, text
    create genome info file for metagenomes
• src/hg/archaeStuff/data/Genome-info-mods
  • 1.62 lines changed: 9, context: html, text, full: html, text
    add geobLovl0 - retrievve from Todd's Genome-info-mods (32-bit src tree)
• src/hg/archaeStuff/scripts/extract-genome-info
  • 1.4 lines changed: 14, context: html, text, full: html, text
    add altdb option for alternate centraldb
  • 1.3 lines changed: 179, context: html, text, full: html, text
    add options to retrieve data from centraldb
• src/hg/archaeStuff/scripts/make-browser-2.0
  • 1.37 lines changed: 5, context: html, text, full: html, text
    add support for metagenomes
  • 1.36 lines changed: 6, context: html, text, full: html, text
    comment out --wikibme; change --wiki for loading genome browser wiki track
• src/hg/archaeStuff/scripts/archaeBrowser/Annotation.pm
  • 1.3 lines changed: 15, context: html, text, full: html, text
    comment out --wikibme; change --wiki for loading genome browser wiki track
• src/hg/archaeStuff/scripts/archaeBrowser/Constant.pm
  • 1.29 lines changed: 13, context: html, text, full: html, text
    add support for metagenomes
• src/hg/archaeStuff/scripts/archaeBrowser/GenomeInfo.pm
  • 1.14 lines changed: 1, context: html, text, full: html, text
    add support for metagenomes
• src/hg/archaeStuff/scripts/archaeBrowser/OrganismDb.pm
  • 1.29 lines changed: 166, context: html, text, full: html, text
    add support for metagenomes
• src/hg/makeDb/trackDb/lowelab/description-template.html
  • 1.9 lines changed: 3, context: html, text, full: html, text
    add LLT and scaffold lists
• src/hg/makeDb/trackDb/lowelab/trackDb.ra
  • 1.72 lines changed: 9, context: html, text, full: html, text
    add scaffolds track
  • 1.71 lines changed: 12, context: html, text, full: html, text
    add AlignFeatures