jsanborn: changes by file

review to branch (2009-04-21 to 2009-04-28) v205

• src/hg/instinct/bioInt2/bioController.c
  • 1.8 lines changed: 40, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/bioController.h
  • 1.5 lines changed: 6, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/bioGeneLevel.c
  • 1.5 lines changed: 121, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/bioIntDb.as
  • 1.5 lines changed: 31, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/bioIntDb.c
  • 1.7 lines changed: 712, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/bioIntDb.h
  • 1.6 lines changed: 395, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/bioIntDb.sql
  • 1.5 lines changed: 34, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/bioIntDriver.c
  • 1.3 lines changed: 797, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/bioIntDriver.h
  • 1.5 lines changed: 70, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/bioIntUI.c
  • 1.20 lines changed: 98, context: html, text, full: html, text
    fixed gene drill down issues
  • 1.19 lines changed: 157, context: html, text, full: html, text
    added drill down into meta-genes
  • 1.18 lines changed: 37, context: html, text, full: html, text
    fixed correlation stuff
  • 1.17 lines changed: 52, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/bioLevelI.c
  • 1.6 lines changed: 38, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/bioSetLevel.c
  • 1.2 lines changed: 79, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/cohortCorrelations.c
  • 1.3 lines changed: 1, context: html, text, full: html, text
    removed printf
  • 1.2 lines changed: 6, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/createTables.c
  • 1.1 lines changed: 281, context: html, text, full: html, text
    initial commit
• src/hg/instinct/bioInt2/makefile
  • 1.8 lines changed: 10, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/populateDb.c
  • 1.9 lines changed: 1, context: html, text, full: html, text
    added drill down into meta-genes
  • 1.8 lines changed: 16, context: html, text, full: html, text
    fixed memory leak
  • 1.7 lines changed: 642, context: html, text, full: html, text
    updated lots of stuff, will break older implementation of database
• src/hg/instinct/bioInt2/setCohorts.c
  • 1.5 lines changed: 20, context: html, text, full: html, text
    added drill down into meta-genes
• src/hg/instinct/hgHeatmap2/hgHeatmapData/datasets.TCGAcontrol.ra
  • 1.8 lines changed: 1, context: html, text, full: html, text
    fixed probe table for ovarian exon array
  • 1.3 lines changed: 20, context: html, text, full: html, text
    added mskcc 1x1M array
  • 1.2 lines changed: 20, context: html, text, full: html, text
    added mskcc set
• src/hg/instinct/lib/hgStatsLib.c
  • 1.13 lines changed: 4, context: html, text, full: html, text
    fixed bug with fishers meta
• src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra
  • 1.70 lines changed: 10, context: html, text, full: html, text
    added mskcc 1x1M array
  • 1.69 lines changed: 3, context: html, text, full: html, text
    fixed harvard Ovarian array
  • 1.68 lines changed: 17, context: html, text, full: html, text
    updated TCGA ovarian datasets
• src/hg/tcga/scripts/DataTypes.py
  • 1.5 lines changed: 213, context: html, text, full: html, text
    added U133A
• src/hg/tcga/scripts/GenericDataType.py
  • 1.5 lines changed: 33, context: html, text, full: html, text
    added U133A
• src/hg/tcga/scripts/processData.py
  • 1.8 lines changed: 39, context: html, text, full: html, text
    added U133A