jsanborn: changes by commit

review to branch (2009-04-21 to 2009-04-28) v205

• added mskcc set
  • src/hg/instinct/hgHeatmap2/hgHeatmapData/datasets.TCGAcontrol.ra 1.2 - lines changed: 20, context: html, text, full: html, text
• updated TCGA ovarian datasets
  • src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra 1.68 - lines changed: 17, context: html, text, full: html, text
• fixed harvard Ovarian array
  • src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra 1.69 - lines changed: 3, context: html, text, full: html, text
• added mskcc 1x1M array
  • src/hg/instinct/hgHeatmap2/hgHeatmapData/datasets.TCGAcontrol.ra 1.3 - lines changed: 20, context: html, text, full: html, text
  • src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra 1.70 - lines changed: 10, context: html, text, full: html, text
• updated lots of stuff, will break older implementation of database
  • src/hg/instinct/bioInt2/bioController.c 1.8 - lines changed: 40, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioController.h 1.5 - lines changed: 6, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioGeneLevel.c 1.5 - lines changed: 121, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.as 1.5 - lines changed: 31, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.c 1.7 - lines changed: 712, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.h 1.6 - lines changed: 395, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.sql 1.5 - lines changed: 34, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDriver.c 1.3 - lines changed: 797, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDriver.h 1.5 - lines changed: 70, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntUI.c 1.17 - lines changed: 52, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioLevelI.c 1.6 - lines changed: 38, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioSetLevel.c 1.2 - lines changed: 79, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/cohortCorrelations.c 1.2 - lines changed: 6, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/makefile 1.8 - lines changed: 10, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/populateDb.c 1.7 - lines changed: 642, context: html, text, full: html, text
• fixed correlation stuff
  • src/hg/instinct/bioInt2/bioIntUI.c 1.18 - lines changed: 37, context: html, text, full: html, text
• fixed bug with fishers meta
  • src/hg/instinct/lib/hgStatsLib.c 1.13 - lines changed: 4, context: html, text, full: html, text
• initial commit
  • src/hg/instinct/bioInt2/createTables.c 1.1 - lines changed: 281, context: html, text, full: html, text
• fixed memory leak
  • src/hg/instinct/bioInt2/populateDb.c 1.8 - lines changed: 16, context: html, text, full: html, text
• removed printf
  • src/hg/instinct/bioInt2/cohortCorrelations.c 1.3 - lines changed: 1, context: html, text, full: html, text
• added drill down into meta-genes
  • src/hg/instinct/bioInt2/bioIntUI.c 1.19 - lines changed: 157, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/populateDb.c 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/setCohorts.c 1.5 - lines changed: 20, context: html, text, full: html, text
• fixed gene drill down issues
  • src/hg/instinct/bioInt2/bioIntUI.c 1.20 - lines changed: 98, context: html, text, full: html, text
• added U133A
  • src/hg/tcga/scripts/DataTypes.py 1.5 - lines changed: 213, context: html, text, full: html, text
  • src/hg/tcga/scripts/GenericDataType.py 1.5 - lines changed: 33, context: html, text, full: html, text
  • src/hg/tcga/scripts/processData.py 1.8 - lines changed: 39, context: html, text, full: html, text
• fixed probe table for ovarian exon array
  • src/hg/instinct/hgHeatmap2/hgHeatmapData/datasets.TCGAcontrol.ra 1.8 - lines changed: 1, context: html, text, full: html, text