tdreszer: changes by file

review to branch (2009-04-21 to 2009-04-28) v205

• src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl
  • 1.11 lines changed: 5, context: html, text, full: html, text
    Okay, when type isn't found in trackDb, then just make it the file type.
  • 1.10 lines changed: 10, context: html, text, full: html, text
    Added lookup of metadata in fileDb.ra (if one exists in downloads directory)
  • 1.9 lines changed: 17, context: html, text, full: html, text
    Special case coding for Elnitski with her tables scattered across genomes.
  • 1.8 lines changed: 34, context: html, text, full: html, text
    dateSubmitted was not getting picked up as it should have been
  • 1.7 lines changed: 137, context: html, text, full: html, text
    Support for metadata setting from trackDb
• src/hg/encode/encodeValidate/config/labs.ra
  • 1.5 lines changed: 2, context: html, text, full: html, text
    Andy is taking over Stam and Weng labs.
• src/hg/inc/trackDb.h
  • 1.47 lines changed: 13, context: html, text, full: html, text
    Add support for parsing out metadata settings.
• src/hg/js/hui.js
  • 1.25 lines changed: 32, context: html, text, full: html, text
    Support for showing metadata in hgTrackUi
• src/hg/js/utils.js
  • 1.19 lines changed: 8, context: html, text, full: html, text
    Kate objects to exclamation marks.
• src/hg/lib/hui.c
  • 1.188 lines changed: 6, context: html, text, full: html, text
    Fix for min score being the same as trackDb default score, and eliminate drag and drop hint when cursor is over longLabel
  • 1.186 lines changed: 175, context: html, text, full: html, text
    Support for showing metadata in hgTrackUi
• src/hg/lib/trackDbCustom.c
  • 1.63 lines changed: 59, context: html, text, full: html, text
    Add support for parsing out metadata settings.
• src/hg/makeDb/schema/all.joiner
  • 1.709 lines changed: 25, context: html, text, full: html, text
    Added wgEncodeGencode tables
• src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra
  • 1.34 lines changed: 1, context: html, text, full: html, text
    Added metadata to wgEncodeNhgriBip track
• src/hg/makeDb/trackDb/cow/bosTau4/trackDb.ra
  • 1.9 lines changed: 1, context: html, text, full: html, text
    Added metadata to wgEncodeNhgriBip track
• src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra
  • 1.28 lines changed: 1, context: html, text, full: html, text
    Added metadata to wgEncodeNhgriBip track
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.268 lines changed: 46, context: html, text, full: html, text
    Update Elnitski BiP track and added new UW DNase tracks with Andy
  • 1.267 lines changed: 3, context: html, text, full: html, text
    Changed some shortLabels for ENCODE Gencode
  • 1.266 lines changed: 3, context: html, text, full: html, text
    Explicitly mark Gencode tracks as genePred so that encodeDownloadsPage.pl does the right thing
  • 1.265 lines changed: 9, context: html, text, full: html, text
    Fixed some metadata settings
  • 1.258 lines changed: 8, context: html, text, full: html, text
    Added some missing color to newly added Open Chromatin tracks
  • 1.256 lines changed: 130, context: html, text, full: html, text
    Added UNC HepG2/FAIRE
• src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html
  • 1.9 lines changed: 28, context: html, text, full: html, text
    Links, contact and Data release policy added
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
  • 1.44 lines changed: 1, context: html, text, full: html, text
    Added metadata to wgEncodeNhgriBip track
• src/hg/makeDb/trackDb/rat/rn4/trackDb.ra
  • 1.33 lines changed: 1, context: html, text, full: html, text
    Added metadata to wgEncodeNhgriBip track
• src/hg/makeDb/trackDb/rhesus/rheMac2/trackDb.ra
  • 1.39 lines changed: 1, context: html, text, full: html, text
    Added metadata to wgEncodeNhgriBip track