tdreszer: changes by commit

review to branch (2009-04-21 to 2009-04-28) v205

• Andy is taking over Stam and Weng labs.
  • src/hg/encode/encodeValidate/config/labs.ra 1.5 - lines changed: 2, context: html, text, full: html, text
• Added UNC HepG2/FAIRE
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.256 - lines changed: 130, context: html, text, full: html, text
• Added some missing color to newly added Open Chromatin tracks
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.258 - lines changed: 8, context: html, text, full: html, text
• Kate objects to exclamation marks.
  • src/hg/js/utils.js 1.19 - lines changed: 8, context: html, text, full: html, text
• Add support for parsing out metadata settings.
  • src/hg/inc/trackDb.h 1.47 - lines changed: 13, context: html, text, full: html, text
  • src/hg/lib/trackDbCustom.c 1.63 - lines changed: 59, context: html, text, full: html, text
• Support for showing metadata in hgTrackUi
  • src/hg/js/hui.js 1.25 - lines changed: 32, context: html, text, full: html, text
  • src/hg/lib/hui.c 1.186 - lines changed: 175, context: html, text, full: html, text
• Support for metadata setting from trackDb
  • src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl 1.7 - lines changed: 137, context: html, text, full: html, text
• dateSubmitted was not getting picked up as it should have been
  • src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl 1.8 - lines changed: 34, context: html, text, full: html, text
• Fixed some metadata settings
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.265 - lines changed: 9, context: html, text, full: html, text
• Added metadata to wgEncodeNhgriBip track
  • src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra 1.34 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau4/trackDb.ra 1.9 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra 1.28 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra 1.44 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn4/trackDb.ra 1.33 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac2/trackDb.ra 1.39 - lines changed: 1, context: html, text, full: html, text
• Special case coding for Elnitski with her tables scattered across genomes.
  • src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl 1.9 - lines changed: 17, context: html, text, full: html, text
• Added lookup of metadata in fileDb.ra (if one exists in downloads directory)
  • src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl 1.10 - lines changed: 10, context: html, text, full: html, text
• Okay, when type isn't found in trackDb, then just make it the file type.
  • src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl 1.11 - lines changed: 5, context: html, text, full: html, text
• Links, contact and Data release policy added
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html 1.9 - lines changed: 28, context: html, text, full: html, text
• Explicitly mark Gencode tracks as genePred so that encodeDownloadsPage.pl does the right thing
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.266 - lines changed: 3, context: html, text, full: html, text
• Added wgEncodeGencode tables
  • src/hg/makeDb/schema/all.joiner 1.709 - lines changed: 25, context: html, text, full: html, text
• Changed some shortLabels for ENCODE Gencode
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.267 - lines changed: 3, context: html, text, full: html, text
• Fix for min score being the same as trackDb default score, and eliminate drag and drop hint when cursor is over longLabel
  • src/hg/lib/hui.c 1.188 - lines changed: 6, context: html, text, full: html, text
• Update Elnitski BiP track and added new UW DNase tracks with Andy
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.268 - lines changed: 46, context: html, text, full: html, text