mikep: changes by file

branch to review (2009-04-14 to 2009-04-21) v204

• src/hg/hgc/hgc.c
  • 1.1526 lines changed: 8, context: html, text, full: html, text
    tagAlign tables have 'sequence' column instead of 'name' column, but otherwise are BED 6 and should be interpretable like that
• src/hg/lib/hdb.c
  • 1.401 lines changed: 2, context: html, text, full: html, text
    tagAlign tables have 'sequence' column instead of 'name' column, but otherwise are BED 6 and should be interpretable like that
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.253 lines changed: 41, context: html, text, full: html, text
    wiggle data for +/- strands
  • 1.252 lines changed: 2, context: html, text, full: html, text
    Helicos description
• src/hg/makeDb/trackDb/human/hg18/wgEncodeHelicosRnaSeq.html
  • 1.3 lines changed: 28, context: html, text, full: html, text
    fixups
  • 1.2 lines changed: 5, context: html, text, full: html, text
    fixups
  • 1.1 lines changed: 124, context: html, text, full: html, text
    Helicos description
• src/hg/makeDb/trackDb/human/hg18/wgEncodeRikenCage.html
  • 1.6 lines changed: 8, context: html, text, full: html, text
    updated from Piero
  • 1.5 lines changed: 3, context: html, text, full: html, text
    fix up contact
  • 1.4 lines changed: 4, context: html, text, full: html, text
    updated message about technologies
• src/inc/bigBed.h
  • 1.12 lines changed: 12, context: html, text, full: html, text
    
• src/lib/bigBed.c
  • 1.16 lines changed: 40, context: html, text, full: html, text
    removed timing messages. added 'sorted' option to speed up creation of gigabyte sized beds.
  • 1.15 lines changed: 61, context: html, text, full: html, text
    
• src/utils/bedToBigBed/bedToBigBed.c
  • 1.4 lines changed: 5, context: html, text, full: html, text
    added sort option, also made changes to bigBed.h + bigBed.c
• src/utils/qa/weeklybld/buildEnv.csh
  • 1.55 lines changed: 2, context: html, text, full: html, text
    v205 preview
• src/utils/qa/weeklybld/doTrackCheckRobot.csh
  • 1.4 lines changed: 2, context: html, text, full: html, text
    need to use hgconf for beta because SQL server is on different host now
• src/utils/qa/weeklybld/doZip.csh
  • 1.8 lines changed: 3, context: html, text, full: html, text
    no js on hgwdownload