kuhn: changes by file

review to branch (2009-05-05 to 2009-05-12) v206

• src/utils/qa/activeGenbank.csh
  • 1.7 lines changed: 1, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/backupCentral.csh
  • 1.13 lines changed: 8, context: html, text, full: html, text
    added code to strip out directories a year old
  • 1.12 lines changed: 1, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/blatPing.csh
  • 1.5 lines changed: 1, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/checkCoverage.csh
  • 1.8 lines changed: 66, context: html, text, full: html, text
    added support for split tables and added a bit of protective logic
• src/utils/qa/checkMetaData.csh
  • 1.18 lines changed: 4, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/compareHgFindSpecFast.csh
  • 1.6 lines changed: 2, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/compareHgFindSpecs.csh
  • 1.10 lines changed: 1, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/compareTrackDbAll.csh
  • 1.21 lines changed: 6, context: html, text, full: html, text
    clarified output so it is clear that "not real time" refers only to RR results
• src/utils/qa/compareTrackDbFast.csh
  • 1.8 lines changed: 1, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/compareTrackDbs.csh
  • 1.28 lines changed: 1, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/countPerChrom.csh
  • 1.7 lines changed: 50, context: html, text, full: html, text
    fixed interaction with split chroms. removed some unused variables. simplified logic and combined some variables. replaced long block with call to getChromFieldName.csh.
• src/utils/qa/databaseAday.csh
  • 1.10 lines changed: 1, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/findBlatServer.csh
  • 1.11 lines changed: 2, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/getChromFieldName.csh
  • 1.3 lines changed: 10, context: html, text, full: html, text
    added support for split tables
• src/utils/qa/getLiftOver.csh
  • 1.6 lines changed: 1, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/getOrderKey.csh
  • 1.6 lines changed: 2, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/getRRdatabases.csh
  • 1.11 lines changed: 1, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/getSplit.csh
  • 1.9 lines changed: 2, context: html, text, full: html, text
    changed to accept hgsqlbeta instead of hgwbeta
  • 1.8 lines changed: 28, context: html, text, full: html, text
    adjusted so default is to dev and a few other cosmetic changes
• src/utils/qa/host.csh
  • 1.5 lines changed: 1, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/qaConfig.csh
  • 1.2 lines changed: 1, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/sessionStats.csh
  • 1.6 lines changed: 9, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/syncAday.csh
  • 1.8 lines changed: 3, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing
• src/utils/qa/trackDbGlobal.csh
  • 1.30 lines changed: 2, context: html, text, full: html, text
    added sqlrr variable where needed to set up for new machine testing