kuhn: changes by commit

review to branch (2009-05-05 to 2009-05-12) v206

• added sqlrr variable where needed to set up for new machine testing
  • src/utils/qa/activeGenbank.csh 1.7 - lines changed: 1, context: html, text, full: html, text
  • src/utils/qa/backupCentral.csh 1.12 - lines changed: 1, context: html, text, full: html, text
  • src/utils/qa/blatPing.csh 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/utils/qa/checkMetaData.csh 1.18 - lines changed: 4, context: html, text, full: html, text
  • src/utils/qa/compareHgFindSpecFast.csh 1.6 - lines changed: 2, context: html, text, full: html, text
  • src/utils/qa/compareHgFindSpecs.csh 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/utils/qa/compareTrackDbFast.csh 1.8 - lines changed: 1, context: html, text, full: html, text
  • src/utils/qa/compareTrackDbs.csh 1.28 - lines changed: 1, context: html, text, full: html, text
  • src/utils/qa/databaseAday.csh 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/utils/qa/findBlatServer.csh 1.11 - lines changed: 2, context: html, text, full: html, text
  • src/utils/qa/getLiftOver.csh 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/utils/qa/getOrderKey.csh 1.6 - lines changed: 2, context: html, text, full: html, text
  • src/utils/qa/getRRdatabases.csh 1.11 - lines changed: 1, context: html, text, full: html, text
  • src/utils/qa/host.csh 1.5 - lines changed: 1, context: html, text, full: html, text
  • src/utils/qa/qaConfig.csh 1.2 - lines changed: 1, context: html, text, full: html, text
  • src/utils/qa/sessionStats.csh 1.6 - lines changed: 9, context: html, text, full: html, text
  • src/utils/qa/syncAday.csh 1.8 - lines changed: 3, context: html, text, full: html, text
  • src/utils/qa/trackDbGlobal.csh 1.30 - lines changed: 2, context: html, text, full: html, text
• added code to strip out directories a year old
  • src/utils/qa/backupCentral.csh 1.13 - lines changed: 8, context: html, text, full: html, text
• clarified output so it is clear that "not real time" refers only to RR results
  • src/utils/qa/compareTrackDbAll.csh 1.21 - lines changed: 6, context: html, text, full: html, text
• adjusted so default is to dev and a few other cosmetic changes
  • src/utils/qa/getSplit.csh 1.8 - lines changed: 28, context: html, text, full: html, text
• added support for split tables
  • src/utils/qa/getChromFieldName.csh 1.3 - lines changed: 10, context: html, text, full: html, text
• added support for split tables and added a bit of protective logic
  • src/utils/qa/checkCoverage.csh 1.8 - lines changed: 66, context: html, text, full: html, text
• fixed interaction with split chroms. removed some unused variables. simplified logic and combined some variables. replaced long block with call to getChromFieldName.csh.
  • src/utils/qa/countPerChrom.csh 1.7 - lines changed: 50, context: html, text, full: html, text
• changed to accept hgsqlbeta instead of hgwbeta
  • src/utils/qa/getSplit.csh 1.9 - lines changed: 2, context: html, text, full: html, text