jsanborn: changes by file

branch to review (2009-04-28 to 2009-05-05) v205

• src/hg/instinct/bioInt2/bioController.c
  • 1.9 lines changed: 22, context: html, text, full: html, text
    added factor graph pipeline and code
• src/hg/instinct/bioInt2/bioController.h
  • 1.6 lines changed: 16, context: html, text, full: html, text
    added factor graph pipeline and code
• src/hg/instinct/bioInt2/bioIntDb.as
  • 1.6 lines changed: 10, context: html, text, full: html, text
    added factor graph pipeline and code
• src/hg/instinct/bioInt2/bioIntDb.c
  • 1.8 lines changed: 173, context: html, text, full: html, text
    added factor graph pipeline and code
• src/hg/instinct/bioInt2/bioIntDb.h
  • 1.7 lines changed: 79, context: html, text, full: html, text
    added factor graph pipeline and code
• src/hg/instinct/bioInt2/bioIntDb.sql
  • 1.6 lines changed: 11, context: html, text, full: html, text
    added factor graph pipeline and code
• src/hg/instinct/bioInt2/bioIntDriver.h
  • 1.6 lines changed: 1, context: html, text, full: html, text
    added factor graph pipeline and code
• src/hg/instinct/bioInt2/bioLevelI.c
  • 1.7 lines changed: 55, context: html, text, full: html, text
    added factor graph pipeline and code
• src/hg/instinct/bioInt2/createTables.c
  • 1.2 lines changed: 18, context: html, text, full: html, text
    added factor graph pipeline and code
• src/hg/instinct/bioInt2/grabData.c
  • 1.5 lines changed: 0, context: html, text, full: html, text
    added factor graph pipeline and code
  • 1.4 lines changed: 104, context: html, text, full: html, text
    fixed grabData for new db structure
• src/hg/instinct/bioInt2/makefile
  • 1.9 lines changed: 1, context: html, text, full: html, text
    added factor graph pipeline and code
• src/hg/instinct/bioInt2/populateDb.c
  • 1.10 lines changed: 77, context: html, text, full: html, text
    added sex correction
• src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra
  • 1.74 lines changed: 4, context: html, text, full: html, text
    added updated version of harvard ovarian CGH array
• src/hg/tcga/scripts/createLabTrackTCGA.py
  • 1.1 lines changed: 55, context: html, text, full: html, text
    added script to generate tcga labTrack file
• src/hg/tcga/scripts/labtrack.sql
  • 1.1 lines changed: 7, context: html, text, full: html, text
    added script to generate tcga labTrack file