jsanborn: changes by commit

branch to review (2009-04-28 to 2009-05-05) v205

• added sex correction
  • src/hg/instinct/bioInt2/populateDb.c 1.10 - lines changed: 77, context: html, text, full: html, text
• fixed grabData for new db structure
  • src/hg/instinct/bioInt2/grabData.c 1.4 - lines changed: 104, context: html, text, full: html, text
• added script to generate tcga labTrack file
  • src/hg/tcga/scripts/createLabTrackTCGA.py 1.1 - lines changed: 55, context: html, text, full: html, text
  • src/hg/tcga/scripts/labtrack.sql 1.1 - lines changed: 7, context: html, text, full: html, text
• added factor graph pipeline and code
  • src/hg/instinct/bioInt2/bioController.c 1.9 - lines changed: 22, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioController.h 1.6 - lines changed: 16, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.as 1.6 - lines changed: 10, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.c 1.8 - lines changed: 173, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.h 1.7 - lines changed: 79, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDb.sql 1.6 - lines changed: 11, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioIntDriver.h 1.6 - lines changed: 1, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/bioLevelI.c 1.7 - lines changed: 55, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/createTables.c 1.2 - lines changed: 18, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/grabData.c 1.5 - lines changed: 0, context: html, text, full: html, text
  • src/hg/instinct/bioInt2/makefile 1.9 - lines changed: 1, context: html, text, full: html, text
• added updated version of harvard ovarian CGH array
  • src/hg/makeDb/hgCgiData/Human/microarrayGroups.ra 1.74 - lines changed: 4, context: html, text, full: html, text