tdreszer: changes by file

branch to review (2009-04-28 to 2009-05-05) v205

• src/hg/bedItemOverlapCount/bedItemOverlapCount.c
  • 1.14 lines changed: 26, context: html, text, full: html, text
    Fixed bug where last chr could be truncated if the previous one was smaller
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.179 lines changed: 1, context: html, text, full: html, text
    No validator for fragLength
• src/hg/encode/encodeValidate/config/cv.ra
  • 1.94 lines changed: 16, context: html, text, full: html, text
    Added Rad21 and XRCC4 antibodies fro Yale
  • 1.93 lines changed: 8, context: html, text, full: html, text
    Added Pol3 for Yale
  • 1.92 lines changed: 5, context: html, text, full: html, text
    Removed some cut and paste errors
  • 1.91 lines changed: 84, context: html, text, full: html, text
    Added 8 cell lines for Stam lab
• src/hg/encode/validateFiles/validateFiles.c
  • 1.17 lines changed: 1, context: html, text, full: html, text
    fastq sequence names can have # in them.
• src/hg/hgTracks/simpleTracks.c
  • 1.77 lines changed: 49, context: html, text, full: html, text
    Rewrote getScoreFilterClause to use hui.c::dyAddFilterAsInt() so that all score filtering uses the same rules
• src/hg/inc/hui.h
  • 1.125 lines changed: 13, context: html, text, full: html, text
    Just changed function comments
  • 1.124 lines changed: 3, context: html, text, full: html, text
    Added a few simple defines
• src/hg/js/utils.js
  • 1.20 lines changed: 8, context: html, text, full: html, text
    Unintentionally left some exclamations in validateInt messages
• src/hg/lib/hui.c
  • 1.190 lines changed: 393, context: html, text, full: html, text
    Rewrote score filtering UI and extraWhere to ensure they all play by the same rules.
  • 1.189 lines changed: 1, context: html, text, full: html, text
    NO_VALUE was moved to cheapcgi.h
• src/hg/makeDb/doc/encodeDccHg18.txt
  • 1.2 lines changed: 9, context: html, text, full: html, text
    Removed this empty doc file as all docs are by lab in the encodeDccHg18 subdirectory
• src/hg/makeDb/schema/all.joiner
  • 1.710 lines changed: 30, context: html, text, full: html, text
    Hopefully fixed wgEncodeGencode and added wgEncodeNhgriBip
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.282 lines changed: 426, context: html, text, full: html, text
    Added Yales resubmitted signals and fixed metadata dates by adding dateResubmitted= value
  • 1.278 lines changed: 275, context: html, text, full: html, text
    Added resubmitted Yale Peaks, though I may be changing unrestructed date yet.
  • 1.276 lines changed: 4, context: html, text, full: html, text
    Added links by trackDb settings to two Gencode tracks
• src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html
  • 1.10 lines changed: 1, context: html, text, full: html, text
    Fixed a broken link
• src/inc/cheapcgi.h
  • 1.63 lines changed: 1, context: html, text, full: html, text
    Added support for a numerical limit having NO_VALUE in the cgiMakeIntWithLimits() and cgiMakeDoubleWithLimits() functions
• src/lib/cheapcgi.c
  • 1.118 lines changed: 55, context: html, text, full: html, text
    Added support for a numerical limit having NO_VALUE in the cgiMakeIntWithLimits() and cgiMakeDoubleWithLimits() functions