tdreszer: changes by commit

branch to review (2009-04-28 to 2009-05-05) v205

• Added support for a numerical limit having NO_VALUE in the cgiMakeIntWithLimits() and cgiMakeDoubleWithLimits() functions
  • src/inc/cheapcgi.h 1.63 - lines changed: 1, context: html, text, full: html, text
  • src/lib/cheapcgi.c 1.118 - lines changed: 55, context: html, text, full: html, text
• Unintentionally left some exclamations in validateInt messages
  • src/hg/js/utils.js 1.20 - lines changed: 8, context: html, text, full: html, text
• Added a few simple defines
  • src/hg/inc/hui.h 1.124 - lines changed: 3, context: html, text, full: html, text
• NO_VALUE was moved to cheapcgi.h
  • src/hg/lib/hui.c 1.189 - lines changed: 1, context: html, text, full: html, text
• Added 8 cell lines for Stam lab
  • src/hg/encode/encodeValidate/config/cv.ra 1.91 - lines changed: 84, context: html, text, full: html, text
• No validator for fragLength
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.179 - lines changed: 1, context: html, text, full: html, text
• Removed some cut and paste errors
  • src/hg/encode/encodeValidate/config/cv.ra 1.92 - lines changed: 5, context: html, text, full: html, text
• Just changed function comments
  • src/hg/inc/hui.h 1.125 - lines changed: 13, context: html, text, full: html, text
• Rewrote score filtering UI and extraWhere to ensure they all play by the same rules.
  • src/hg/lib/hui.c 1.190 - lines changed: 393, context: html, text, full: html, text
• Rewrote getScoreFilterClause to use hui.c::dyAddFilterAsInt() so that all score filtering uses the same rules
  • src/hg/hgTracks/simpleTracks.c 1.77 - lines changed: 49, context: html, text, full: html, text
• Added links by trackDb settings to two Gencode tracks
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.276 - lines changed: 4, context: html, text, full: html, text
• Fixed bug where last chr could be truncated if the previous one was smaller
  • src/hg/bedItemOverlapCount/bedItemOverlapCount.c 1.14 - lines changed: 26, context: html, text, full: html, text
• Hopefully fixed wgEncodeGencode and added wgEncodeNhgriBip
  • src/hg/makeDb/schema/all.joiner 1.710 - lines changed: 30, context: html, text, full: html, text
• Added Pol3 for Yale
  • src/hg/encode/encodeValidate/config/cv.ra 1.93 - lines changed: 8, context: html, text, full: html, text
• Added Rad21 and XRCC4 antibodies fro Yale
  • src/hg/encode/encodeValidate/config/cv.ra 1.94 - lines changed: 16, context: html, text, full: html, text
• Added resubmitted Yale Peaks, though I may be changing unrestructed date yet.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.278 - lines changed: 275, context: html, text, full: html, text
• fastq sequence names can have # in them.
  • src/hg/encode/validateFiles/validateFiles.c 1.17 - lines changed: 1, context: html, text, full: html, text
• Removed this empty doc file as all docs are by lab in the encodeDccHg18 subdirectory
  • src/hg/makeDb/doc/encodeDccHg18.txt 1.2 - lines changed: 9, context: html, text, full: html, text
• Added Yales resubmitted signals and fixed metadata dates by adding dateResubmitted= value
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.282 - lines changed: 426, context: html, text, full: html, text
• Fixed a broken link
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeSangerGencode.html 1.10 - lines changed: 1, context: html, text, full: html, text