ann: changes by file

review to branch (2009-05-19 to 2009-05-26) v207

• src/hg/makeDb/schema/all.joiner
  • 1.714 lines changed: 11, context: html, text, full: html, text
    added rules for two new UCSC to Ensembl mapping tables for hg18,hg19.
• src/utils/qa/browserUsage.csh
  • 1.5 lines changed: 2, context: html, text, full: html, text
    made usage more clear
• src/utils/qa/copyExtSeqRows.csh
  • 1.11 lines changed: 5, context: html, text, full: html, text
    cleared up two output messages
  • 1.10 lines changed: 2, context: html, text, full: html, text
    quieting more egreps
  • 1.9 lines changed: 1, context: html, text, full: html, text
    quiet the egrep. this section also works for symlinks (which was untested until now)
  • 1.8 lines changed: 7, context: html, text, full: html, text
    exit at the end of setup run just in case something is wrong and it runs into the real run
  • 1.7 lines changed: 23, context: html, text, full: html, text
    used multi-line echo trick
• src/utils/qa/igtc.csh
  • 1.22 lines changed: 10, context: html, text, full: html, text
    My preliminary attempt to clean up the 'sqlbeta' substitutions made during the last checkin. It is going to need to be tested during the next run of this script. Most of the variables were not being interpreted.
• src/utils/qa/makeUniProtFile.csh
  • 1.5 lines changed: 18, context: html, text, full: html, text
    sweet tweaks from Brooke
  • 1.4 lines changed: 19, context: html, text, full: html, text
    UniProt has decided that they want to connect using 'org' names rather than 'db' names. I have cautioned them. This fixes the script to produce only 'org' names.
• src/utils/qa/makefile
  • 1.108 lines changed: 0, context: html, text, full: html, text
    it wanted a tab not spaces
  • 1.107 lines changed: 2, context: html, text, full: html, text
    added cvsup to makefile so we can be sure we are building the latest and greatest