tdreszer: changes by file

review to branch (2009-05-19 to 2009-05-26) v207

• src/hg/encode/encodeValidate/config/cv.ra
  • 1.99 lines changed: 1, context: html, text, full: html, text
    Fix misspelling - Thanks Angie
  • 1.98 lines changed: 1, context: html, text, full: html, text
    Misnamed a protocol
  • 1.97 lines changed: 24, context: html, text, full: html, text
    Added approved protocols
• src/hg/encode/hgEncodeVocab/hgEncodeVocab.c
  • 1.22 lines changed: 53, context: html, text, full: html, text
    Added code for a protocol setting in cv.ra which is needed for lab specific protocols on tier 3 cell lines
• src/hg/hgTrackUi/hgTrackUi.c
  • 1.490 lines changed: 1, context: html, text, full: html, text
    'Maximum' display mode is needed where there is a mult0view, not when dimensions exist.
• src/hg/inc/hui.h
  • 1.130 lines changed: 4, context: html, text, full: html, text
    Make filterBySetCfgUi() publicly available
  • 1.129 lines changed: 3, context: html, text, full: html, text
    Added multiViewCount()
• src/hg/lib/cart.c
  • 1.107 lines changed: 1, context: html, text, full: html, text
    Angie pointed out that my last ci erroneously presumes oldVars is never NULL
• src/hg/lib/hui.c
  • 1.202 lines changed: 4, context: html, text, full: html, text
    The same NO_VALUE protextion is needed for the float version
  • 1.201 lines changed: 38, context: html, text, full: html, text
    handle implied 'scoreFilter' setting and assume that filter at limits is the same as no filter
  • 1.200 lines changed: 5, context: html, text, full: html, text
    Need to not limit min/max default score if 'NO_VALUE' was passed in.
  • 1.199 lines changed: 52, context: html, text, full: html, text
    Added multiViewCount(), support for boxedCfg setting, moved multiView call up a level.
  • 1.198 lines changed: 98, context: html, text, full: html, text
    Fixed scoreFilter defaults code and matrix rendering when dimension row/column has no accociated subtrack
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.309 lines changed: 4, context: html, text, full: html, text
    Reregenerated Yale LargeFrag with fragLength=575
  • 1.308 lines changed: 48, context: html, text, full: html, text
    ReRegenerated Open Chromatin Raw Signals and finally got FAIRE HeLa-S3 Peaks which were accidentally missing
  • 1.305 lines changed: 27, context: html, text, full: html, text
    Cleaned up mapability track
• src/hg/makeDb/trackDb/human/hg18/wgEncodeMapability.html
  • 1.2 lines changed: 53, context: html, text, full: html, text
    Terry provided his methods