tdreszer: changes by commit

review to branch (2009-05-19 to 2009-05-26) v207

• Added approved protocols
  • src/hg/encode/encodeValidate/config/cv.ra 1.97 - lines changed: 24, context: html, text, full: html, text
• Misnamed a protocol
  • src/hg/encode/encodeValidate/config/cv.ra 1.98 - lines changed: 1, context: html, text, full: html, text
• Added code for a protocol setting in cv.ra which is needed for lab specific protocols on tier 3 cell lines
  • src/hg/encode/hgEncodeVocab/hgEncodeVocab.c 1.22 - lines changed: 53, context: html, text, full: html, text
• Fixed scoreFilter defaults code and matrix rendering when dimension row/column has no accociated subtrack
  • src/hg/lib/hui.c 1.198 - lines changed: 98, context: html, text, full: html, text
• Added multiViewCount()
  • src/hg/inc/hui.h 1.129 - lines changed: 3, context: html, text, full: html, text
• Added multiViewCount(), support for boxedCfg setting, moved multiView call up a level.
  • src/hg/lib/hui.c 1.199 - lines changed: 52, context: html, text, full: html, text
• 'Maximum' display mode is needed where there is a mult0view, not when dimensions exist.
  • src/hg/hgTrackUi/hgTrackUi.c 1.490 - lines changed: 1, context: html, text, full: html, text
• Cleaned up mapability track
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.305 - lines changed: 27, context: html, text, full: html, text
• Terry provided his methods
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeMapability.html 1.2 - lines changed: 53, context: html, text, full: html, text
• Angie pointed out that my last ci erroneously presumes oldVars is never NULL
  • src/hg/lib/cart.c 1.107 - lines changed: 1, context: html, text, full: html, text
• Need to not limit min/max default score if 'NO_VALUE' was passed in.
  • src/hg/lib/hui.c 1.200 - lines changed: 5, context: html, text, full: html, text
• Make filterBySetCfgUi() publicly available
  • src/hg/inc/hui.h 1.130 - lines changed: 4, context: html, text, full: html, text
• handle implied 'scoreFilter' setting and assume that filter at limits is the same as no filter
  • src/hg/lib/hui.c 1.201 - lines changed: 38, context: html, text, full: html, text
• ReRegenerated Open Chromatin Raw Signals and finally got FAIRE HeLa-S3 Peaks which were accidentally missing
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.308 - lines changed: 48, context: html, text, full: html, text
• The same NO_VALUE protextion is needed for the float version
  • src/hg/lib/hui.c 1.202 - lines changed: 4, context: html, text, full: html, text
• Reregenerated Yale LargeFrag with fragLength=575
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.309 - lines changed: 4, context: html, text, full: html, text
• Fix misspelling - Thanks Angie
  • src/hg/encode/encodeValidate/config/cv.ra 1.99 - lines changed: 1, context: html, text, full: html, text