angie: changes by file

review to branch (2009-06-02 to 2009-06-09) v208

• src/hg/hgTables/custom.c
  • 1.42 lines changed: 1, context: html, text, full: html, text
    Restored a line of code inadvertently deleted in 1.38 (green beer ? ;)
• src/hg/hgTables/filterFields.c
  • 1.76 lines changed: 14, context: html, text, full: html, text
    cgiToDoubleFilter wasn't allocating quite enough space for its results, and callers of cgiToDoubleFilter weren't handling NULL results.
• src/hg/hgc/hgc.c
  • 1.1548 lines changed: 124, context: html, text, full: html, text
    Added printSnp125CodingAnnotations, to display coding effects of SNPs from a table specified by a new trackDb setting (e.g. dbSNP's annotations).
• src/hg/inc/snp125CodingCoordless.h
  • 1.1 lines changed: 70, context: html, text, full: html, text
    Added snp125CodingCoordless: coding effects of SNPs identified only by ID (no disambiguating coords, tsk tsk dbSNP).
• src/hg/lib/makefile
  • 1.389 lines changed: 1, context: html, text, full: html, text
    Added snp125CodingCoordless: coding effects of SNPs identified only by ID (no disambiguating coords, tsk tsk dbSNP).
• src/hg/lib/snp125CodingCoordless.as
  • 1.1 lines changed: 12, context: html, text, full: html, text
    Added snp125CodingCoordless: coding effects of SNPs identified only by ID (no disambiguating coords, tsk tsk dbSNP).
• src/hg/lib/snp125CodingCoordless.c
  • 1.1 lines changed: 256, context: html, text, full: html, text
    Added snp125CodingCoordless: coding effects of SNPs identified only by ID (no disambiguating coords, tsk tsk dbSNP).
• src/hg/lib/snp125CodingCoordless.sql
  • 1.1 lines changed: 18, context: html, text, full: html, text
    Added snp125CodingCoordless: coding effects of SNPs identified only by ID (no disambiguating coords, tsk tsk dbSNP).
• src/hg/lib/web.c
  • 1.166 lines changed: 1, context: html, text, full: html, text
    Bumped up a buf size -- caught by Mark, checking the error_log for his new pstack dumps.
• src/hg/makeDb/schema/all.joiner
  • 1.717 lines changed: 69, context: html, text, full: html, text
    Added snp130CodingDbSnp to identifier snpName130. Consolidated identifiers for snp*.name.
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.394 lines changed: 2, context: html, text, full: html, text
    Added new setting codingAnnotations to snp130 (for hgc).