angie: changes by commit

review to branch (2009-06-02 to 2009-06-09) v208

• Added printSnp125CodingAnnotations, to display coding effects of SNPs from a table specified by a new trackDb setting (e.g. dbSNP's annotations).
  • src/hg/hgc/hgc.c 1.1548 - lines changed: 124, context: html, text, full: html, text
• Added snp125CodingCoordless: coding effects of SNPs identified only by ID (no disambiguating coords, tsk tsk dbSNP).
  • src/hg/inc/snp125CodingCoordless.h 1.1 - lines changed: 70, context: html, text, full: html, text
  • src/hg/lib/makefile 1.389 - lines changed: 1, context: html, text, full: html, text
  • src/hg/lib/snp125CodingCoordless.as 1.1 - lines changed: 12, context: html, text, full: html, text
  • src/hg/lib/snp125CodingCoordless.c 1.1 - lines changed: 256, context: html, text, full: html, text
  • src/hg/lib/snp125CodingCoordless.sql 1.1 - lines changed: 18, context: html, text, full: html, text
• Added new setting codingAnnotations to snp130 (for hgc).
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.394 - lines changed: 2, context: html, text, full: html, text
• Added snp130CodingDbSnp to identifier snpName130. Consolidated identifiers for snp*.name.
  • src/hg/makeDb/schema/all.joiner 1.717 - lines changed: 69, context: html, text, full: html, text
• cgiToDoubleFilter wasn't allocating quite enough space for its results, and callers of cgiToDoubleFilter weren't handling NULL results.
  • src/hg/hgTables/filterFields.c 1.76 - lines changed: 14, context: html, text, full: html, text
• Restored a line of code inadvertently deleted in 1.38 (green beer ? ;)
  • src/hg/hgTables/custom.c 1.42 - lines changed: 1, context: html, text, full: html, text
• Bumped up a buf size -- caught by Mark, checking the error_log for his new pstack dumps.
  • src/hg/lib/web.c 1.166 - lines changed: 1, context: html, text, full: html, text