tdreszer: changes by file

branch to review (2009-05-26 to 2009-06-02) v207

• src/hg/encode/encodeLoad/doEncodeLoad.pl
  • 1.65 lines changed: 16, context: html, text, full: html, text
    Load should now make the RawSignals files but put them in 'raw' subdir. Fixed some typos.
• src/hg/encode/encodeValidate/config/cv.ra
  • 1.102 lines changed: 1, context: html, text, full: html, text
    One protocol had a broken link
  • 1.101 lines changed: 11, context: html, text, full: html, text
    Added some cell line protocols which had not been checked in before
  • 1.100 lines changed: 189, context: html, text, full: html, text
    Approved cell lines for Myers: BG02ES,H9ES, HAL, HFL11W and HFL24W
• src/hg/hgc/regMotif.c
  • 1.20 lines changed: 1, context: html, text, full: html, text
    Added score to the transRegCode hgc
• src/hg/lib/hui.c
  • 1.207 lines changed: 25, context: html, text, full: html, text
    Minor changes to UI links. Ensure two cfg boxes are not opened at the same time
  • 1.205 lines changed: 26, context: html, text, full: html, text
    Support for composite level controls to update view and subtrack level. Support for blocking view level controls. Fix for single dimension matrix.
• src/hg/makeDb/trackDb/wgEncodeNhgriBip.html
  • 1.1 lines changed: 92, context: html, text, full: html, text
    Moved this description page to the root directory because it is needed for hg18, mm9, rn4, panTro2, rheMac2, canFam2 and bosTau4
• src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra
  • 1.35 lines changed: 1, context: html, text, full: html, text
    Added 'NHGRI' to long label of ENCODE BiP track
• src/hg/makeDb/trackDb/cow/bosTau4/trackDb.ra
  • 1.10 lines changed: 1, context: html, text, full: html, text
    Added 'NHGRI' to long label of ENCODE BiP track
• src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra
  • 1.29 lines changed: 1, context: html, text, full: html, text
    Added 'NHGRI' to long label of ENCODE BiP track
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.327 lines changed: 1, context: html, text, full: html, text
    Moved mapability track to map group
  • 1.326 lines changed: 6, context: html, text, full: html, text
    Changed some Elnitski labels
  • 1.324 lines changed: 23, context: html, text, full: html, text
    Added searching for geneId on ENCODE Gencode tables
  • 1.320 lines changed: 24, context: html, text, full: html, text
    Added searching to ENCODE Gencode and 1D matrix to mapability
  • 1.314 lines changed: 24, context: html, text, full: html, text
    ShortLable needs to be short
  • 1.313 lines changed: 1445, context: html, text, full: html, text
    Broad's Raw Signals were updated
• src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html
  • 1.6 lines changed: 76, context: html, text, full: html, text
    Terry Furey's latest take on this. Not doubt it will be parred down.
  • 1.5 lines changed: 9, context: html, text, full: html, text
    Added description of Base Overlap Signal
• src/hg/makeDb/trackDb/human/hg18/wgEncodeNhgriBip.html
  • 1.3 lines changed: 79, context: html, text, full: html, text
    Moved this description page to the root directory because it is needed for hg18, mm9, rn4, panTro2, rheMac2, canFam2 and bosTau4
• src/hg/makeDb/trackDb/human/hg18/wgEncodeNhgriNre.html
  • 1.3 lines changed: 36, context: html, text, full: html, text
    Reformatting. No wording changes, except adding contact
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
  • 1.45 lines changed: 1, context: html, text, full: html, text
    Added 'NHGRI' to long label of ENCODE BiP track
• src/hg/makeDb/trackDb/rat/rn4/trackDb.ra
  • 1.34 lines changed: 1, context: html, text, full: html, text
    Added 'NHGRI' to long label of ENCODE BiP track
• src/hg/makeDb/trackDb/rhesus/rheMac2/trackDb.ra
  • 1.40 lines changed: 1, context: html, text, full: html, text
    Added 'NHGRI' to long label of ENCODE BiP track
• src/lib/htmshell.c
  • 1.49 lines changed: 3, context: html, text, full: html, text
    Kayla didn't like the prev button repeat errors