tdreszer: changes by commit

branch to review (2009-05-26 to 2009-06-02) v207

• Broad's Raw Signals were updated
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.313 - lines changed: 1445, context: html, text, full: html, text
• ShortLable needs to be short
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.314 - lines changed: 24, context: html, text, full: html, text
• Support for composite level controls to update view and subtrack level. Support for blocking view level controls. Fix for single dimension matrix.
  • src/hg/lib/hui.c 1.205 - lines changed: 26, context: html, text, full: html, text
• Added searching to ENCODE Gencode and 1D matrix to mapability
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.320 - lines changed: 24, context: html, text, full: html, text
• Kayla didn't like the prev button repeat errors
  • src/lib/htmshell.c 1.49 - lines changed: 3, context: html, text, full: html, text
• Added score to the transRegCode hgc
  • src/hg/hgc/regMotif.c 1.20 - lines changed: 1, context: html, text, full: html, text
• Load should now make the RawSignals files but put them in 'raw' subdir. Fixed some typos.
  • src/hg/encode/encodeLoad/doEncodeLoad.pl 1.65 - lines changed: 16, context: html, text, full: html, text
• Added description of Base Overlap Signal
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html 1.5 - lines changed: 9, context: html, text, full: html, text
• Approved cell lines for Myers: BG02ES,H9ES, HAL, HFL11W and HFL24W
  • src/hg/encode/encodeValidate/config/cv.ra 1.100 - lines changed: 189, context: html, text, full: html, text
• Added some cell line protocols which had not been checked in before
  • src/hg/encode/encodeValidate/config/cv.ra 1.101 - lines changed: 11, context: html, text, full: html, text
• One protocol had a broken link
  • src/hg/encode/encodeValidate/config/cv.ra 1.102 - lines changed: 1, context: html, text, full: html, text
• Terry Furey's latest take on this. Not doubt it will be parred down.
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html 1.6 - lines changed: 76, context: html, text, full: html, text
• Minor changes to UI links. Ensure two cfg boxes are not opened at the same time
  • src/hg/lib/hui.c 1.207 - lines changed: 25, context: html, text, full: html, text
• Added searching for geneId on ENCODE Gencode tables
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.324 - lines changed: 23, context: html, text, full: html, text
• Moved this description page to the root directory because it is needed for hg18, mm9, rn4, panTro2, rheMac2, canFam2 and bosTau4
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeNhgriBip.html 1.3 - lines changed: 79, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/wgEncodeNhgriBip.html 1.1 - lines changed: 92, context: html, text, full: html, text
• Added 'NHGRI' to long label of ENCODE BiP track
  • src/hg/makeDb/trackDb/chimp/panTro2/trackDb.ra 1.35 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/cow/bosTau4/trackDb.ra 1.10 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/dog/canFam2/trackDb.ra 1.29 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra 1.45 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rat/rn4/trackDb.ra 1.34 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/rhesus/rheMac2/trackDb.ra 1.40 - lines changed: 1, context: html, text, full: html, text
• Changed some Elnitski labels
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.326 - lines changed: 6, context: html, text, full: html, text
• Reformatting. No wording changes, except adding contact
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeNhgriNre.html 1.3 - lines changed: 36, context: html, text, full: html, text
• Moved mapability track to map group
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.327 - lines changed: 1, context: html, text, full: html, text