tdreszer: changes by file

review to branch (2009-06-16 to 2009-06-23) v209

• src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl
  • 1.14 lines changed: 37, context: html, text, full: html, text
    Moved sub metadataLineToArrays to Encode.pm so that doEncodeValidate.pl can also use it
• src/hg/encode/encodeValidate/doEncodeValidate.pl
  • 1.184 lines changed: 1, context: html, text, full: html, text
    That was a stupid error
  • 1.183 lines changed: 58, context: html, text, full: html, text
    Trying to get old metadata for new submissions
• src/hg/encode/encodeValidate/config/cv.ra
  • 1.116 lines changed: 39, context: html, text, full: html, text
    Added 3 new tier 3s for Stam lab
• src/hg/encode/encodeValidate/config/fields.ra
  • 1.17 lines changed: 5, context: html, text, full: html, text
    Added dataVersion for the DAF
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.365 lines changed: 4, context: html, text, full: html, text
    Terry had one more adjustment
  • 1.364 lines changed: 10, context: html, text, full: html, text
    Added wgEncodeUncFAIREseqBaseOverlapSignalK562 back in
  • 1.362 lines changed: 10, context: html, text, full: html, text
    Temporarily remove K562/FAIRE/Signal BO to reload it
  • 1.359 lines changed: 20, context: html, text, full: html, text
    Open Chromatin short labels of GM12878 cannot be abreviated to GM128.
  • 1.358 lines changed: 7, context: html, text, full: html, text
    Someone finally had the sense to point out that the name 'Excludable regions' was a lemon
  • 1.357 lines changed: 3, context: html, text, full: html, text
    More twiddling... Actually fixing some of my mistakes with the last check-in
  • 1.356 lines changed: 73, context: html, text, full: html, text
    More adjustments for Terry's Open Chromatin
  • 1.355 lines changed: 29, context: html, text, full: html, text
    Terry's signal viewLimit defaults
  • 1.352 lines changed: 9, context: html, text, full: html, text
    Set Vishy Iyer's default viewLimits for ChIP experiments
• src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html
  • 1.15 lines changed: 1, context: html, text, full: html, text
    Someone finally had the sense to point out that the name 'Excludable regions' was a lemon
  • 1.14 lines changed: 4, context: html, text, full: html, text
    More twiddling... Actually fixing some of my mistakes with the last check-in
  • 1.13 lines changed: 3, context: html, text, full: html, text
    Renamed Signal tracks on Terry's request
  • 1.12 lines changed: 27, context: html, text, full: html, text
    Terry requested some changes which recommend that the user turns on auto-scale for signals
• src/hg/makeDb/trackDb/human/hg18/wgEncodeMapability.html
  • 1.10 lines changed: 17, context: html, text, full: html, text
    Someone finally had the sense to point out that the name 'Excludable regions' was a lemon
  • 1.9 lines changed: 5, context: html, text, full: html, text
    Terry finally weighs in on 'Duke Excludable' regions description
• src/hg/utils/automation/Encode.pm
  • 1.43 lines changed: 36, context: html, text, full: html, text
    I forgot to check this in earlier. Moved metadataLinesToArrays from encodeDownloadsPage.pl to lib so that it could be called by doEnocodeValidate.pl