tdreszer: changes by commit

review to branch (2009-06-16 to 2009-06-23) v209

• Added dataVersion for the DAF
  • src/hg/encode/encodeValidate/config/fields.ra 1.17 - lines changed: 5, context: html, text, full: html, text
• Added 3 new tier 3s for Stam lab
  • src/hg/encode/encodeValidate/config/cv.ra 1.116 - lines changed: 39, context: html, text, full: html, text
• Set Vishy Iyer's default viewLimits for ChIP experiments
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.352 - lines changed: 9, context: html, text, full: html, text
• Terry's signal viewLimit defaults
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.355 - lines changed: 29, context: html, text, full: html, text
• Terry requested some changes which recommend that the user turns on auto-scale for signals
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html 1.12 - lines changed: 27, context: html, text, full: html, text
• Renamed Signal tracks on Terry's request
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html 1.13 - lines changed: 3, context: html, text, full: html, text
• More adjustments for Terry's Open Chromatin
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.356 - lines changed: 73, context: html, text, full: html, text
• More twiddling... Actually fixing some of my mistakes with the last check-in
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.357 - lines changed: 3, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html 1.14 - lines changed: 4, context: html, text, full: html, text
• Terry finally weighs in on 'Duke Excludable' regions description
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeMapability.html 1.9 - lines changed: 5, context: html, text, full: html, text
• Someone finally had the sense to point out that the name 'Excludable regions' was a lemon
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.358 - lines changed: 7, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html 1.15 - lines changed: 1, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg18/wgEncodeMapability.html 1.10 - lines changed: 17, context: html, text, full: html, text
• Open Chromatin short labels of GM12878 cannot be abreviated to GM128.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.359 - lines changed: 20, context: html, text, full: html, text
• Trying to get old metadata for new submissions
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.183 - lines changed: 58, context: html, text, full: html, text
• Temporarily remove K562/FAIRE/Signal BO to reload it
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.362 - lines changed: 10, context: html, text, full: html, text
• Moved sub metadataLineToArrays to Encode.pm so that doEncodeValidate.pl can also use it
  • src/hg/encode/encodeDownloadsPage/encodeDownloadsPage.pl 1.14 - lines changed: 37, context: html, text, full: html, text
• Added wgEncodeUncFAIREseqBaseOverlapSignalK562 back in
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.364 - lines changed: 10, context: html, text, full: html, text
• That was a stupid error
  • src/hg/encode/encodeValidate/doEncodeValidate.pl 1.184 - lines changed: 1, context: html, text, full: html, text
• Terry had one more adjustment
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.365 - lines changed: 4, context: html, text, full: html, text
• I forgot to check this in earlier. Moved metadataLinesToArrays from encodeDownloadsPage.pl to lib so that it could be called by doEnocodeValidate.pl
  • src/hg/utils/automation/Encode.pm 1.43 - lines changed: 36, context: html, text, full: html, text