angie: changes by file

branch to review (2009-06-09 to 2009-06-16) v208

• src/hg/hgGene/hgGene.c
  • 1.115 lines changed: 8, context: html, text, full: html, text
    Prevent stack dump in case of stoopid invocation (googlebots).
• src/hg/hgSession/hgSession.c
  • 1.51 lines changed: 44, context: html, text, full: html, text
    Merged some duplicate notification messages about custom tracks and blat results when creating a session -- Thanks Ann.
• src/hg/hgTracks/cds.c
  • 1.100 lines changed: 12, context: html, text, full: html, text
    Some code for codons smaller than 3 bases was erroneously applied to noncoding blocks smaller than 3 bases.
• src/hg/lib/cart.c
  • 1.110 lines changed: 9, context: html, text, full: html, text
    Added stderr logging (a la htmlVaWarn) to cartEarlyWarningHandler, so we get an informative message along with the stack dump.
• src/hg/makeDb/trackDb/README
  • 1.77 lines changed: 14, context: html, text, full: html, text
    Added section describing settings specific to the snp125 (or later) tracks -- Kate's review feedback.
• src/hg/makeDb/trackDb/makefile
  • 1.269 lines changed: 1, context: html, text, full: html, text
    Added sacCer2 (why was it missing?).
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.342 lines changed: 8, context: html, text, full: html, text
    wgEncodeGencode names are not specific enough to warrant semiShortCircuit -- that was excluding UCSC Genes and other matches.