hartera: changes by file

branch to review (2009-06-09 to 2009-06-16) v208

• src/hg/makeDb/doc/hg18.txt
  • 1.365 lines changed: 79, context: html, text, full: html, text
    Updated the wgRna track with latest miRBase and snoRNABase data.
• src/hg/makeDb/doc/mm9.txt
  • 1.99 lines changed: 2, context: html, text, full: html, text
    Added a note to the miRNA track update section.
  • 1.98 lines changed: 5, context: html, text, full: html, text
    Fixed an off by 1 error in the BED file loaded for miRNA track.
  • 1.97 lines changed: 5, context: html, text, full: html, text
    Minor edits and added release date for miRNA data.
  • 1.96 lines changed: 4, context: html, text, full: html, text
    Re-loaded the miRNA track after adding scores that correspond to whether the sequence is on the + or - strand.
  • 1.95 lines changed: 47, context: html, text, full: html, text
    Updated the miRNA track to miRBase data release 13.0.
• src/hg/makeDb/trackDb/human/trackDb.ra
  • 1.463 lines changed: 1, context: html, text, full: html, text
    Changed long label of old wgRna track.
  • 1.462 lines changed: 2, context: html, text, full: html, text
    Updated short labels on sno/miRNA tracks.
  • 1.461 lines changed: 28, context: html, text, full: html, text
    After updating the wgRna track, renamed the old track to wgOld to keep it around for a while before replacing it with the new track.
  • 1.460 lines changed: 1, context: html, text, full: html, text
    Added html encoding for correct rendering of URL label for wgRna track.
• src/hg/makeDb/trackDb/human/wgRna.html
  • 1.7 lines changed: 55, context: html, text, full: html, text
    Updated description for updated wgRna track.
  • 1.6 lines changed: 11, context: html, text, full: html, text
    Updated wgRNA track description. hg18 is the only human assembly with the track at the moment.
• src/hg/makeDb/trackDb/human/wgRnaOld.html
  • 1.1 lines changed: 93, context: html, text, full: html, text
    wgRna track was updated to temporarily renamed old track to keep it around for a while before being replaced by the new track.
• src/hg/makeDb/trackDb/human/hg18/trackDb.ra
  • 1.396 lines changed: 19, context: html, text, full: html, text
    Removed wgRna track entry as duplicated from trackDb.ra at human level.
• src/hg/makeDb/trackDb/human/hg18/wgRnaJun09.html
  • 1.2 lines changed: 5, context: html, text, full: html, text
    Removed reference to Blat.
  • 1.1 lines changed: 97, context: html, text, full: html, text
    Track description for the sno/miRNA track update.
• src/hg/makeDb/trackDb/mouse/mm9/miRNA.html
  • 1.4 lines changed: 31, context: html, text, full: html, text
    Updated the miRNA track description after updating to Release 13.0 from miRBase. Added another reference.
• src/hg/makeDb/trackDb/mouse/mm9/miRNAMay2008.html
  • 1.1 lines changed: 80, context: html, text, full: html, text
    Old version of miRNA track description, use for release beta until new miRNA track released.
• src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra
  • 1.49 lines changed: 1, context: html, text, full: html, text
    removed html extension for html line for miRNA release beta.
  • 1.48 lines changed: 15, context: html, text, full: html, text
    Added release alpha and beta versions of miRNA track until the update is released.
  • 1.47 lines changed: 1, context: html, text, full: html, text
    Re-enabled use of scoring for miRNA track.
  • 1.46 lines changed: 2, context: html, text, full: html, text
    Added version number for update of miRNA track and removed useScore as there is no score for this track.