hartera: changes by commit

branch to review (2009-06-09 to 2009-06-16) v208

• Added version number for update of miRNA track and removed useScore as there is no score for this track.
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra 1.46 - lines changed: 2, context: html, text, full: html, text
• Updated the miRNA track to miRBase data release 13.0.
  • src/hg/makeDb/doc/mm9.txt 1.95 - lines changed: 47, context: html, text, full: html, text
• Re-enabled use of scoring for miRNA track.
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra 1.47 - lines changed: 1, context: html, text, full: html, text
• Updated the miRNA track description after updating to Release 13.0 from miRBase. Added another reference.
  • src/hg/makeDb/trackDb/mouse/mm9/miRNA.html 1.4 - lines changed: 31, context: html, text, full: html, text
• Re-loaded the miRNA track after adding scores that correspond to whether the sequence is on the + or - strand.
  • src/hg/makeDb/doc/mm9.txt 1.96 - lines changed: 4, context: html, text, full: html, text
• Minor edits and added release date for miRNA data.
  • src/hg/makeDb/doc/mm9.txt 1.97 - lines changed: 5, context: html, text, full: html, text
• Old version of miRNA track description, use for release beta until new miRNA track released.
  • src/hg/makeDb/trackDb/mouse/mm9/miRNAMay2008.html 1.1 - lines changed: 80, context: html, text, full: html, text
• Added release alpha and beta versions of miRNA track until the update is released.
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra 1.48 - lines changed: 15, context: html, text, full: html, text
• removed html extension for html line for miRNA release beta.
  • src/hg/makeDb/trackDb/mouse/mm9/trackDb.ra 1.49 - lines changed: 1, context: html, text, full: html, text
• Fixed an off by 1 error in the BED file loaded for miRNA track.
  • src/hg/makeDb/doc/mm9.txt 1.98 - lines changed: 5, context: html, text, full: html, text
• Added a note to the miRNA track update section.
  • src/hg/makeDb/doc/mm9.txt 1.99 - lines changed: 2, context: html, text, full: html, text
• Track description for the sno/miRNA track update.
  • src/hg/makeDb/trackDb/human/hg18/wgRnaJun09.html 1.1 - lines changed: 97, context: html, text, full: html, text
• Removed reference to Blat.
  • src/hg/makeDb/trackDb/human/hg18/wgRnaJun09.html 1.2 - lines changed: 5, context: html, text, full: html, text
• Removed wgRna track entry as duplicated from trackDb.ra at human level.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.ra 1.396 - lines changed: 19, context: html, text, full: html, text
• Added html encoding for correct rendering of URL label for wgRna track.
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.460 - lines changed: 1, context: html, text, full: html, text
• Updated wgRNA track description. hg18 is the only human assembly with the track at the moment.
  • src/hg/makeDb/trackDb/human/wgRna.html 1.6 - lines changed: 11, context: html, text, full: html, text
• Updated description for updated wgRna track.
  • src/hg/makeDb/trackDb/human/wgRna.html 1.7 - lines changed: 55, context: html, text, full: html, text
• wgRna track was updated to temporarily renamed old track to keep it around for a while before being replaced by the new track.
  • src/hg/makeDb/trackDb/human/wgRnaOld.html 1.1 - lines changed: 93, context: html, text, full: html, text
• After updating the wgRna track, renamed the old track to wgOld to keep it around for a while before replacing it with the new track.
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.461 - lines changed: 28, context: html, text, full: html, text
• Updated the wgRna track with latest miRBase and snoRNABase data.
  • src/hg/makeDb/doc/hg18.txt 1.365 - lines changed: 79, context: html, text, full: html, text
• Updated short labels on sno/miRNA tracks.
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.462 - lines changed: 2, context: html, text, full: html, text
• Changed long label of old wgRna track.
  • src/hg/makeDb/trackDb/human/trackDb.ra 1.463 - lines changed: 1, context: html, text, full: html, text