hiram: changes by file

branch to review (2009-06-09 to 2009-06-16) v208

• src/hg/hgTrackUi/hgTrackUi.c
  • 1.492 lines changed: 1, context: html, text, full: html, text
    Fixup chainCfgUi to work properly on split table names
• src/hg/hgTracks/netTrack.c
  • 1.26 lines changed: 29, context: html, text, full: html, text
    Implement modes squish and pack for net tracks
• src/hg/inc/hui.h
  • 1.131 lines changed: 1, context: html, text, full: html, text
    Fixup chainCfgUi to work properly on split table names
• src/hg/lib/hui.c
  • 1.211 lines changed: 10, context: html, text, full: html, text
    Fixup chainCfgUi to work properly on split table names
• src/hg/makeDb/trackDb/trackDb.ra
  • 1.511 lines changed: 37, context: html, text, full: html, text
    Adding poodle chain/net
• src/hg/makeDb/trackDb/human/hg19/hg19ChainNet.html
  • 1.1 lines changed: 155, context: html, text, full: html, text
    Adding a generic chain net description page for all the chains and nets
• src/hg/makeDb/trackDb/human/hg19/trackDb.ra
  • 1.29 lines changed: 3, context: html, text, full: html, text
    Adding a generic chain net description page for all the chains and nets
  • 1.28 lines changed: 130, context: html, text, full: html, text
    Organizing the big chain net composites into clades
• src/hg/makeDb/trackDb/sacCer/sacCer2/sgdOther.html
  • 1.1 lines changed: 15, context: html, text, full: html, text
    Fixup sgdOther reference to new assembly and turn off the score filter
• src/hg/makeDb/trackDb/sacCer/sacCer2/trackDb.ra
  • 1.6 lines changed: 3, context: html, text, full: html, text
    Fixup sgdOther reference to new assembly and turn off the score filter
• src/hg/ratStuff/mafSplitPos/mafSplitPos.c
  • 1.6 lines changed: 39, context: html, text, full: html, text
    This didn't work when gap and rmsk were not split tables, fix that up with more extensive MySQL queries