hiram: changes by commit

branch to review (2009-06-09 to 2009-06-16) v208

• This didn't work when gap and rmsk were not split tables, fix that up with more extensive MySQL queries
  • src/hg/ratStuff/mafSplitPos/mafSplitPos.c 1.6 - lines changed: 39, context: html, text, full: html, text
• Fixup sgdOther reference to new assembly and turn off the score filter
  • src/hg/makeDb/trackDb/sacCer/sacCer2/sgdOther.html 1.1 - lines changed: 15, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/sacCer/sacCer2/trackDb.ra 1.6 - lines changed: 3, context: html, text, full: html, text
• Fixup chainCfgUi to work properly on split table names
  • src/hg/hgTrackUi/hgTrackUi.c 1.492 - lines changed: 1, context: html, text, full: html, text
  • src/hg/inc/hui.h 1.131 - lines changed: 1, context: html, text, full: html, text
  • src/hg/lib/hui.c 1.211 - lines changed: 10, context: html, text, full: html, text
• Organizing the big chain net composites into clades
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.28 - lines changed: 130, context: html, text, full: html, text
• Adding poodle chain/net
  • src/hg/makeDb/trackDb/trackDb.ra 1.511 - lines changed: 37, context: html, text, full: html, text
• Implement modes squish and pack for net tracks
  • src/hg/hgTracks/netTrack.c 1.26 - lines changed: 29, context: html, text, full: html, text
• Adding a generic chain net description page for all the chains and nets
  • src/hg/makeDb/trackDb/human/hg19/hg19ChainNet.html 1.1 - lines changed: 155, context: html, text, full: html, text
  • src/hg/makeDb/trackDb/human/hg19/trackDb.ra 1.29 - lines changed: 3, context: html, text, full: html, text