tdreszer: changes by file

branch to review (2009-06-09 to 2009-06-16) v208

• src/hg/encode/encodeValidate/config/cv.ra
  • 1.113 lines changed: 8, context: html, text, full: html, text
    Added E2F6 antibody for Yale
  • 1.112 lines changed: 32, context: html, text, full: html, text
    Added K562b and HepG2b alternate cell lines because Yale and UCDavis can't agree
• src/hg/hgTracks/wigTrack.c
  • 1.91 lines changed: 10, context: html, text, full: html, text
    It appears that these changes were committed in January, then stepped on in February
• src/hg/lib/hui.c
  • 1.213 lines changed: 14, context: html, text, full: html, text
    Kate didn't like colons, count occupied rows and columns in matrix, composteViewControlNameFromTdb didn't support ClosestToHome.
  • 1.212 lines changed: 240, context: html, text, full: html, text
    Huge Yale matrix requires right buttons and bottom buttons
  • 1.210 lines changed: 2, context: html, text, full: html, text
    Yale's many subtracks outgrew the 8 bit counter that I was using
  • 1.209 lines changed: 3, context: html, text, full: html, text
    Missing Restricted Until link
• src/hg/lib/jsHelper.c
  • 1.26 lines changed: 2, context: html, text, full: html, text
    I removed js file versioning by fake get variable, as it has led to some browsers/configurations reacquiring the file from the server every time a function is called. Versioning solution still remains to be done.
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.351 lines changed: 81, context: html, text, full: html, text
    Added Yale/UCD K562b E2F6 and Setdb1
  • 1.348 lines changed: 1, context: html, text, full: html, text
    Fixed metadata associated with moving excluded regions from open chramatin to mapability
  • 1.347 lines changed: 31, context: html, text, full: html, text
    Moved Excluded Regions to the Mapability track
  • 1.346 lines changed: 247, context: html, text, full: html, text
    Yale is one massive 2D array
  • 1.345 lines changed: 231, context: html, text, full: html, text
    More Yale Tables K562b/E2F2 and HepG2b/TR4
  • 1.344 lines changed: 1, context: html, text, full: html, text
    Typo on of of the billion tablenames
  • 1.343 lines changed: 288, context: html, text, full: html, text
    Added new Yale treatments, split out 'b' versions of K562 and HepG2, reworked some metadata
  • 1.341 lines changed: 3393, context: html, text, full: html, text
    Added a bunch of Yale treatments which necessitated breaking the composite between alpha nad beta and creating a 3D matrix for on alpha
• src/hg/makeDb/trackDb/human/hg18/wgEncodeChromatinMap.html
  • 1.11 lines changed: 1, context: html, text, full: html, text
    Minor wording change
  • 1.10 lines changed: 17, context: html, text, full: html, text
    Moved Excluded Regions to the Mapability track
• src/hg/makeDb/trackDb/human/hg18/wgEncodeMapability.html
  • 1.8 lines changed: 4, context: html, text, full: html, text
    Changed the wording for Duke excludable regions
  • 1.7 lines changed: 11, context: html, text, full: html, text
    Moved Excluded Regions to the Mapability track
  • 1.6 lines changed: 12, context: html, text, full: html, text
    Bryan updated his uniqueness methods