genbank: changes by file

branch to review (2009-06-23 to 2009-06-30) v209

• src/hg/makeDb/genbank/makefile
  • 1.15 lines changed: 5, context: html, text, full: html, text
    running load on hgnfs1 requires a copy of hgsql
• src/hg/makeDb/genbank/etc/dbload
  • 1.28 lines changed: 1, context: html, text, full: html, text
    moved grepIndex to /gbdb/genbank/grepIndex
  • 1.27 lines changed: 9, context: html, text, full: html, text
    relocate grepIndex on hgnfs1
  • 1.26 lines changed: 1, context: html, text, full: html, text
    switch hgsqlrr load host to hgnfs1
  • 1.25 lines changed: 1, context: html, text, full: html, text
    move hgsqlrr update to hgw2 to aboid poltergeist
• src/hg/makeDb/genbank/etc/hgnfs1.crontab
  • 1.6 lines changed: 15, context: html, text, full: html, text
    switch hgsqlrr load host to hgnfs1
• src/hg/makeDb/genbank/etc/rr-dbload
  • 1.34 lines changed: 6, context: html, text, full: html, text
    
• src/hg/makeDb/genbank/src/dbload/gbDbLoadStep
  • 1.49 lines changed: 15, context: html, text, full: html, text
    allow override of grepIndex location
  • 1.48 lines changed: 3, context: html, text, full: html, text
    don't try to build grepIndex on hgnfs1
• src/hg/makeDb/genbank/src/lib/gbCommon.pm
  • 1.46 lines changed: 1, context: html, text, full: html, text
    switch hgsqlrr load host to hgnfs1
  • 1.45 lines changed: 1, context: html, text, full: html, text
    move hgsqlrr update to hgw2 to aboid poltergeist
• src/hg/makeDb/genbank/src/lib/gbDefs.c
  • 1.12 lines changed: 2, context: html, text, full: html, text
    disabled poltergeist hack
  • 1.11 lines changed: 3, context: html, text, full: html, text
    output more info when molType corruption is detected
  • 1.10 lines changed: 13, context: html, text, full: html, text
    attempt to correct very strange corruption reading gbidx files on RR
  • 1.9 lines changed: 4, context: html, text, full: html, text
    added dumpStack call in attempt to understand intermitent bug
• src/hg/makeDb/genbank/src/lib/gbProcessed.c
  • 1.9 lines changed: 11, context: html, text, full: html, text
    output more info when molType corruption is detected