aamp: changes by file

branch to review (2009-07-07 to 2009-07-15) v210

• src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb
  • 1.88 lines changed: 13, context: html, text, full: html, text
    Run validator with -allowReloads if (a) the box is checked on the upload page, or (b) user is an admin.
  • 1.87 lines changed: 6, context: html, text, full: html, text
    Changes to list and show_user action dealing with the submitter CGI var, as well as sort defaults.
• src/hg/encode/hgEncodeSubmit/app/helpers/sort_helper.rb
  • 1.2 lines changed: 3, context: html, text, full: html, text
    Necessary small extension to helper to add optional params to the sort link i.e. the additional submitter CGI var.
• src/hg/encode/hgEncodeSubmit/app/views/layouts/main.rhtml
  • 1.10 lines changed: 1, context: html, text, full: html, text
    Make sure that when viewing list of submissions from a submitter, all three of the main links on the top navbar are clickable.
• src/hg/encode/hgEncodeSubmit/app/views/pipeline/list.rhtml
  • 1.22 lines changed: 6, context: html, text, full: html, text
    Run validator with -allowReloads if (a) the box is checked on the upload page, or (b) user is an admin.
  • 1.21 lines changed: 16, context: html, text, full: html, text
    Various changes to sort links, added links to Submitter column, removed "Type" column.
• src/hg/encode/hgEncodeSubmit/app/views/pipeline/show.rhtml
  • 1.43 lines changed: 1, context: html, text, full: html, text
    Various changes to sort links, added links to Submitter column, removed "Type" column.
• src/hg/encode/hgEncodeSubmit/app/views/pipeline/upload.rhtml
  • 1.19 lines changed: 5, context: html, text, full: html, text
    Run validator with -allowReloads if (a) the box is checked on the upload page, or (b) user is an admin.
• src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb
  • 1.14 lines changed: 7, context: html, text, full: html, text
    Run validator with -allowReloads if (a) the box is checked on the upload page, or (b) user is an admin.
• src/hg/encode/hgEncodeSubmit/public/stylesheets/encode.css
  • 1.4 lines changed: 1, context: html, text, full: html, text
    Made left margin 5% instead of 15%... there was just too much space on the left.
• src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra
  • 1.416 lines changed: 689, context: html, text, full: html, text
    Put UW DNase tracks back into trackDb. Will work around validation stuff another way i.e. adding -allowReloads validate capability in the pipeline.
  • 1.414 lines changed: 691, context: html, text, full: html, text
    Removed UW DNase-seq in prep for reload (to avoid validation errors)