aamp: changes by commit

branch to review (2009-07-07 to 2009-07-15) v210

• Changes to list and show_user action dealing with the submitter CGI var, as well as sort defaults.
  • src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb 1.87 - lines changed: 6, context: html, text, full: html, text
• Necessary small extension to helper to add optional params to the sort link i.e. the additional submitter CGI var.
  • src/hg/encode/hgEncodeSubmit/app/helpers/sort_helper.rb 1.2 - lines changed: 3, context: html, text, full: html, text
• Make sure that when viewing list of submissions from a submitter, all three of the main links on the top navbar are clickable.
  • src/hg/encode/hgEncodeSubmit/app/views/layouts/main.rhtml 1.10 - lines changed: 1, context: html, text, full: html, text
• Various changes to sort links, added links to Submitter column, removed "Type" column.
  • src/hg/encode/hgEncodeSubmit/app/views/pipeline/list.rhtml 1.21 - lines changed: 16, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/app/views/pipeline/show.rhtml 1.43 - lines changed: 1, context: html, text, full: html, text
• Made left margin 5% instead of 15%... there was just too much space on the left.
  • src/hg/encode/hgEncodeSubmit/public/stylesheets/encode.css 1.4 - lines changed: 1, context: html, text, full: html, text
• Removed UW DNase-seq in prep for reload (to avoid validation errors)
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.414 - lines changed: 691, context: html, text, full: html, text
• Put UW DNase tracks back into trackDb. Will work around validation stuff another way i.e. adding -allowReloads validate capability in the pipeline.
  • src/hg/makeDb/trackDb/human/hg18/trackDb.wgEncode.ra 1.416 - lines changed: 689, context: html, text, full: html, text
• Run validator with -allowReloads if (a) the box is checked on the upload page, or (b) user is an admin.
  • src/hg/encode/hgEncodeSubmit/app/controllers/pipeline_controller.rb 1.88 - lines changed: 13, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/app/views/pipeline/list.rhtml 1.22 - lines changed: 6, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/app/views/pipeline/upload.rhtml 1.19 - lines changed: 5, context: html, text, full: html, text
  • src/hg/encode/hgEncodeSubmit/lib/pipeline_background.rb 1.14 - lines changed: 7, context: html, text, full: html, text